FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0140400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.26 (0.0207) R2 : 0.00416
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0602 (0.0436) R2dN8 : 0.00537 R2N8 : 0.00416
σ : 0.39
deviance : 69.81
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
65.81 0.381 3.26 0.0938 0.344 -0.303 -0.226 -0.0244 -0.0756 2.22 11.39 27 -- --
65.81 0.378 3.26 0.0938 0.346 -0.305 -0.248 -- -0.0758 2.19 11.47 26 -- --
65.88 0.378 3.26 0.098 0.338 -0.296 -- -0.169 -0.0739 2.29 11.17 26 -- --
66.04 0.378 3.26 0.1 0.345 -0.303 -- -- -0.0741 2.24 11.71 26 -- --
68.33 0.385 3.26 0.106 -- -0.0971 -- -0.191 -0.0534 -- 5.52 14 -- --
67.49 0.385 3.25 0.0982 0.197 -- 0.0403 -- -0.0522 7.09 -- -- -- --
67.49 0.385 3.25 0.0989 0.197 -- -- -- -0.0523 7.02 -- -- -- --
68.5 0.387 3.26 0.104 -- -0.0997 -- -- -0.0523 -- 5.68 9 -- --
66.3 0.379 3.26 -- 0.344 -0.302 -- -- -0.0853 2.27 11.96 26 -- --
69.53 0.39 3.25 0.103 -- -- -- -- -0.0487 -- -- -- -- --
67.75 0.385 3.25 -- 0.198 -- -- -- -0.0634 6.99 -- -- -- --
68.78 0.388 3.26 -- -- -0.0994 -- -- -0.0639 -- 5.68 9 -- --
69.81 0.39 3.26 -- -- -- -- -- -0.0602 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.33 atmosphere 1005.0 30 > th dose dependent rect. 2 6
3 64.56 radiation 10.0 10 > th dose independent rect. 6 1
29 64.56 radiation 10.0 10 > th dose dependent rect. 6 1
93 65.14 atmosphere 995.0 90 > th dose dependent rect. 11 21
94 65.15 atmosphere 1000.0 30 > th dose dependent rect. 19 13
96 65.16 radiation 10.0 30 < th dose dependent rect. 3 23
98 65.17 humidity 90.0 90 < th dose dependent rect. 2 5
99 65.21 atmosphere 1005.0 10 > th dose dependent rect. 6 2
101 65.22 humidity 90.0 90 < th dose independent rect. 2 5
102 65.24 wind 3.0 10 < th dose dependent rect. 6 1
104 65.25 temperature 25.0 90 < th dose independent rect. 6 1
114 65.32 temperature 25.0 720 > th dose dependent rect. 23 10
115 65.34 wind 9.0 720 < th dose independent rect. 15 16
126 65.40 wind 1.0 4320 < th dose dependent rect. 17 4
129 65.41 wind 9.0 720 < th dose independent rect. 19 8
137 65.46 temperature 25.0 720 > th dose independent rect. 3 6
141 65.49 atmosphere 995.0 720 > th dose independent rect. 7 8
146 65.52 atmosphere 1005.0 30 > th dose dependent rect. 16 16
152 65.55 atmosphere 1010.0 10 < th dose independent rect. 3 12
157 65.57 wind 1.0 10 < th dose independent rect. 6 1
158 65.57 temperature 10.0 720 > th dose independent rect. 7 8
159 65.57 temperature 10.0 720 > th dose independent rect. 19 8
160 65.57 temperature 30.0 720 < th dose independent rect. 19 8
161 65.57 humidity 50.0 720 > th dose independent rect. 19 8
162 65.57 atmosphere 995.0 720 > th dose independent rect. 19 8
163 65.57 atmosphere 1015.0 720 < th dose independent rect. 7 8
164 65.57 radiation 1.0 720 < th dose independent rect. 19 8
169 65.57 temperature 10.0 720 > th dose independent rect. 3 16
170 65.57 temperature 10.0 720 > th dose independent rect. 15 16
171 65.57 radiation 1.0 720 < th dose dependent rect. 19 8
176 65.57 radiation 10.0 30 < th dose dependent rect. 21 23
177 65.58 radiation 1.0 720 < th dose independent rect. 21 8
178 65.58 atmosphere 1015.0 720 < th dose independent rect. 3 16
179 65.58 humidity 80.0 30 > th dose dependent rect. 6 1
182 65.60 wind 1.0 4320 < th dose independent rect. 17 4
183 65.60 temperature 10.0 720 > th dose independent rect. 21 8
184 65.60 temperature 30.0 720 < th dose independent rect. 21 8
185 65.60 humidity 50.0 720 > th dose independent rect. 21 8
188 65.60 atmosphere 995.0 720 > th dose independent rect. 21 8
192 65.60 temperature 10.0 720 > th dose independent rect. 5 16
195 65.60 radiation 10.0 720 < th dose dependent rect. 21 8
201 65.61 temperature 10.0 720 > th dose independent rect. 9 8
202 65.61 atmosphere 1015.0 720 < th dose independent rect. 9 8
204 65.61 temperature 10.0 720 > th dose independent rect. 17 16
227 65.63 precipitation 0.1 720 < th dose independent rect. 7 8
229 65.63 precipitation 0.1 720 < th dose dependent rect. 7 8
233 65.64 precipitation 0.1 720 < th dose independent rect. 3 16
238 65.64 precipitation 0.1 720 < th dose dependent rect. 3 16
239 65.65 temperature 30.0 720 < th dose independent rect. 19 18
240 65.65 temperature 10.0 720 > th dose dependent rect. 7 2
248 65.66 radiation 30.0 30 > th dose dependent rect. 15 17
265 65.70 precipitation 0.1 720 < th dose independent rect. 17 16
268 65.70 precipitation 0.1 720 < th dose dependent rect. 17 16
272 65.71 precipitation 0.1 720 < th dose independent rect. 21 8
273 65.71 radiation 30.0 10 > th dose independent rect. 15 17
275 65.71 precipitation 0.1 720 < th dose dependent rect. 21 8
283 65.72 temperature 25.0 1440 < th dose independent rect. 7 1
290 65.73 atmosphere 995.0 720 > th dose independent rect. 17 16
293 65.73 atmosphere 1005.0 10 > th dose dependent rect. 22 10
298 65.74 wind 5.0 720 < th dose independent rect. 20 1
301 65.74 atmosphere 1005.0 270 > th dose dependent rect. 2 2
303 65.75 radiation 1.0 30 < th dose independent rect. 3 23
308 65.76 temperature 25.0 720 > th dose independent rect. 7 2
312 65.76 atmosphere 1000.0 30 > th dose independent rect. 11 21
316 65.76 radiation 10.0 10 < th dose dependent rect. 7 23
318 65.77 wind 9.0 720 < th dose independent rect. 21 8
319 65.77 atmosphere 995.0 720 > th dose independent rect. 3 16
346 65.80 radiation 10.0 30 > th dose independent rect. 9 23
357 65.82 wind 1.0 4320 > th dose independent rect. 17 5
362 65.82 atmosphere 1015.0 720 < th dose independent rect. 5 16
363 65.82 radiation 40.0 720 < th dose independent rect. 17 16
364 65.82 temperature 30.0 30 < th dose independent rect. 11 21
365 65.82 temperature 30.0 90 < th dose dependent rect. 6 1
369 65.83 wind 1.0 43200 > th dose independent rect. 8 1
371 65.83 wind 9.0 720 < th dose independent rect. 9 8
377 65.83 radiation 10.0 30 < th dose dependent rect. 13 21
396 65.85 wind 9.0 720 < th dose dependent rect. 19 2
407 65.86 wind 9.0 720 < th dose independent rect. 5 16
409 65.86 radiation 40.0 720 < th dose independent rect. 15 16
414 65.86 temperature 10.0 30 > th dose dependent rect. 8 22
416 65.86 radiation 10.0 30 < th dose dependent rect. 17 23
417 65.87 atmosphere 995.0 14400 > th dose independent sin 9 NA
418 65.87 radiation 10.0 30 > th dose independent sin 12 NA
419 65.87 wind 1.0 90 < th dose independent rect. 8 1
421 65.87 humidity 80.0 90 < th dose independent rect. 2 1
425 65.87 precipitation 0.1 720 < th dose independent rect. 19 8
427 65.87 wind 7.0 720 < th dose independent rect. 17 14
429 65.87 radiation 10.0 30 > th dose independent rect. 11 21
430 65.87 humidity 80.0 90 < th dose dependent rect. 2 1
431 65.87 humidity 90.0 10 < th dose dependent rect. 3 1
434 65.87 atmosphere 1005.0 10 > th dose dependent rect. 2 2
436 65.87 atmosphere 1000.0 30 > th dose dependent rect. 8 3
437 65.87 precipitation 0.1 720 < th dose dependent rect. 19 8
438 65.87 atmosphere 995.0 14400 < th dose dependent rect. 17 10
439 65.87 radiation 10.0 30 < th dose dependent rect. 17 21
443 65.88 atmosphere 995.0 14400 < th dose independent sin 9 NA
444 65.88 humidity 90.0 10 < th dose independent rect. 3 1
448 65.88 atmosphere 995.0 720 > th dose independent rect. 15 16
449 65.88 radiation 10.0 30 < th dose dependent no NA NA
450 65.88 radiation 10.0 10 < th dose dependent rect. 6 1
456 65.88 radiation 1.0 30 > th dose dependent rect. 15 17
466 65.89 temperature 25.0 1440 < th dose independent rect. 3 6
467 65.89 atmosphere 995.0 14400 < th dose dependent sin 12 NA
477 65.89 radiation 10.0 30 < th dose dependent rect. 17 17
488 65.90 temperature 25.0 1440 < th dose independent rect. 4 4
490 65.90 humidity 90.0 14400 > th dose independent rect. 2 6
491 65.90 atmosphere 1000.0 90 > th dose independent rect. 7 23
502 65.91 atmosphere 995.0 14400 < th dose independent sin 7 NA
517 65.92 atmosphere 1005.0 30 > th dose independent rect. 8 3
523 65.92 atmosphere 995.0 14400 < th dose dependent sin 5 NA
562 65.94 temperature 25.0 720 < th dose independent rect. 5 2
567 65.94 atmosphere 995.0 720 > th dose independent rect. 5 16
573 65.94 atmosphere 995.0 14400 < th dose dependent rect. 18 5
594 65.95 radiation 30.0 720 > th dose independent rect. 15 17
596 65.95 atmosphere 1010.0 10 < th dose independent rect. 3 23
597 65.95 radiation 10.0 30 > th dose independent rect. 11 23
598 65.95 wind 1.0 90 < th dose dependent rect. 8 1
603 65.95 precipitation 0.1 4320 > th dose dependent rect. 17 7
635 65.97 atmosphere 995.0 720 > th dose independent rect. 13 6
636 65.97 atmosphere 995.0 720 > th dose independent rect. 9 8
641 65.97 temperature 10.0 30 > th dose dependent rect. 8 3
648 65.97 atmosphere 995.0 14400 < th dose dependent rect. 1 14
654 65.98 wind 3.0 90 < th dose independent rect. 6 1
655 65.98 humidity 70.0 90 > th dose independent rect. 9 1
657 65.98 humidity 90.0 14400 > th dose independent rect. 3 4
659 65.98 atmosphere 995.0 14400 < th dose independent rect. 18 12
682 65.98 radiation 10.0 30 < th dose dependent rect. 17 15
691 65.99 precipitation 0.1 4320 > th dose independent rect. 17 7
692 65.99 precipitation 0.1 4320 < th dose independent rect. 17 7
694 65.99 atmosphere 1010.0 10 < th dose independent rect. 4 15
695 65.99 precipitation 0.1 720 < th dose independent rect. 21 22
703 65.99 precipitation 0.1 4320 < th dose dependent rect. 17 7
713 65.99 temperature 25.0 30 > th dose dependent rect. 17 18
715 65.99 precipitation 0.1 720 < th dose dependent rect. 21 22
717 66.00 wind 1.0 30 > th dose independent rect. 8 3
718 66.00 humidity 70.0 90 > th dose independent rect. 8 3
724 66.00 atmosphere 1000.0 90 > th dose independent rect. 8 11
726 66.00 temperature 30.0 720 < th dose independent rect. 9 13
727 66.00 atmosphere 995.0 14400 > th dose independent rect. 18 16
730 66.00 atmosphere 995.0 720 > th dose independent rect. 7 18
731 66.00 precipitation 0.1 30 < th dose independent rect. 11 21
734 66.00 radiation 1.0 43200 < th dose dependent rect. 3 1
738 66.00 wind 5.0 30 < th dose dependent rect. 2 6
748 66.00 precipitation 0.1 30 < th dose dependent rect. 11 21
750 66.01 temperature 25.0 90 < th dose independent rect. 8 1
751 66.01 radiation 30.0 720 > th dose independent rect. 15 1
761 66.01 atmosphere 995.0 14400 > th dose independent rect. 18 13
764 66.01 wind 9.0 30 < th dose independent rect. 11 21
767 66.01 atmosphere 995.0 720 > th dose dependent rect. 19 2
782 66.02 atmosphere 1010.0 10 < th dose independent sin 4 NA
784 66.02 temperature 10.0 1440 > th dose independent rect. 9 3
787 66.02 temperature 30.0 30 < th dose independent rect. 8 3
788 66.02 atmosphere 995.0 1440 > th dose independent rect. 9 3
798 66.02 wind 7.0 720 < th dose independent rect. 17 12
799 66.02 wind 7.0 720 < th dose independent rect. 19 12
800 66.02 temperature 30.0 720 < th dose independent rect. 15 16
801 66.02 atmosphere 995.0 14400 > th dose independent rect. 18 18
802 66.02 temperature 10.0 1440 > th dose independent rect. 12 21
807 66.02 humidity 50.0 30 > th dose dependent rect. 8 3
815 66.02 precipitation 0.1 4320 > th dose dependent rect. 8 16
822 66.02 precipitation 0.1 4320 > th dose dependent rect. 8 19
825 66.03 radiation 1.0 720 > th dose independent rect. 7 2
826 66.03 precipitation 0.1 720 < th dose independent rect. 17 2
828 66.03 radiation 30.0 10 < th dose independent rect. 8 3
835 66.03 atmosphere 995.0 14400 > th dose independent rect. 22 15
842 66.03 temperature 30.0 90 < th dose independent rect. 9 23
845 66.03 precipitation 0.1 720 < th dose dependent rect. 17 2
846 66.03 wind 9.0 30 < th dose dependent rect. 8 3
849 66.03 humidity 90.0 4320 > th dose dependent rect. 17 5
859 66.03 precipitation 0.1 4320 > th dose dependent rect. 10 14
879 66.04 wind 9.0 30 < th dose independent rect. 8 3
880 66.04 temperature 10.0 30 > th dose independent rect. 8 3
887 66.04 atmosphere 1015.0 30 < th dose independent rect. 8 3
888 66.04 radiation 1.0 30 > th dose independent rect. 8 3
889 66.04 precipitation 0.1 30 < th dose independent rect. 8 3
898 66.04 temperature 30.0 720 < th dose independent rect. 10 11
900 66.04 radiation 1.0 90 > th dose independent rect. 5 12
911 66.04 temperature 10.0 30 > th dose independent rect. 11 21
917 66.04 precipitation 0.1 30 < th dose dependent rect. 8 3
932 66.04 temperature 10.0 30 > th dose dependent rect. 8 18
937 66.05 temperature 25.0 90 < th dose independent rect. 5 3
940 66.05 humidity 90.0 14400 < th dose independent rect. 2 5
953 66.05 wind 5.0 30 < th dose independent rect. 19 13
982 66.05 precipitation 0.1 4320 > th dose dependent rect. 20 22