Os04g0139700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os04g0139700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.88 | 0.318 | 7.25 | -0.974 | 0.39 | 0.499 | -0.385 | 0.376 | 0.128 | 13.3 | 20.6 | 220 | -- | -- |
| 46.41 | 0.317 | 7.25 | -1.03 | 0.393 | 0.462 | -0.249 | -- | 0.141 | 13.4 | 20.57 | 198 | -- | -- |
| 46.43 | 0.317 | 7.25 | -0.982 | 0.387 | 0.492 | -- | 0.296 | 0.121 | 13.4 | 20.59 | 226 | -- | -- |
| 46.65 | 0.318 | 7.26 | -1.05 | 0.39 | 0.463 | -- | -- | 0.113 | 13.5 | 20.58 | 195 | -- | -- |
| 55.28 | 0.346 | 7.26 | -0.956 | -- | 0.552 | -- | 0.293 | 0.082 | -- | 20.6 | 183 | -- | -- |
| 54.31 | 0.345 | 7.24 | -0.904 | 0.476 | -- | -0.246 | -- | 0.207 | 13.6 | -- | -- | -- | -- |
| 54.54 | 0.346 | 7.24 | -0.912 | 0.477 | -- | -- | -- | 0.206 | 13.7 | -- | -- | -- | -- |
| 55 | 0.345 | 7.27 | -1.08 | -- | 0.571 | -- | -- | 0.082 | -- | 20.4 | 139 | -- | -- |
| 74.25 | 0.404 | 7.22 | -- | 0.442 | 0.222 | -- | -- | 0.271 | 13.8 | 20.58 | 195 | -- | -- |
| 68.38 | 0.386 | 7.24 | -0.931 | -- | -- | -- | -- | 0.195 | -- | -- | -- | -- | -- |
| 76.46 | 0.409 | 7.21 | -- | 0.493 | -- | -- | -- | 0.308 | 13.7 | -- | -- | -- | -- |
| 84.67 | 0.429 | 7.25 | -- | -- | 0.352 | -- | -- | 0.227 | -- | 20.63 | 132 | -- | -- |
| 91.26 | 0.446 | 7.22 | -- | -- | -- | -- | -- | 0.299 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.09 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 2 | 45.21 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 3 | 45.21 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 4 | 45.23 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 5 | 45.33 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 8 | 45.49 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 9 | 45.58 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 11 | 45.65 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 16 | 45.94 | wind | 3.0 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 20 | 45.99 | wind | 9.0 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 21 | 46.02 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 23 | 46.06 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 26 | 46.08 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 27 | 46.10 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 30 | 46.15 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 14 | 22 |
| 34 | 46.20 | wind | 3.0 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 35 | 46.20 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 6 | 7 |
| 37 | 46.22 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 74 | 46.50 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 82 | 46.56 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 84 | 46.58 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 23 |
| 87 | 46.59 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 94 | 46.62 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 98 | 46.64 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 23 |
| 105 | 46.67 | temperature | 25.0 | 90 | < th | dose dependent | no | NA | NA |
| 109 | 46.67 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 117 | 46.70 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 128 | 46.74 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 135 | 46.78 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 138 | 46.79 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 141 | 46.81 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 151 | 46.86 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 152 | 46.87 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 22 | 8 |
| 170 | 46.90 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 182 | 46.93 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 185 | 46.93 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 219 | 47.02 | temperature | 20.0 | 90 | > th | dose independent | rect. | 8 | 23 |
| 220 | 47.02 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 22 | 6 |
| 278 | 47.16 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 297 | 47.21 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 312 | 47.23 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 4 |
| 319 | 47.25 | temperature | 20.0 | 90 | > th | dose independent | rect. | 15 | 23 |
| 351 | 47.31 | temperature | 20.0 | 90 | > th | dose independent | rect. | 20 | 23 |
| 365 | 47.33 | temperature | 20.0 | 90 | < th | dose independent | rect. | 23 | 23 |
| 371 | 47.34 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 394 | 47.39 | wind | 3.0 | 43200 | > th | dose independent | rect. | 23 | 5 |
| 412 | 47.42 | temperature | 20.0 | 270 | < th | dose independent | rect. | 10 | 22 |
| 418 | 47.43 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 23 |
| 435 | 47.45 | temperature | 20.0 | 270 | > th | dose independent | no | NA | NA |
| 444 | 47.46 | wind | 3.0 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 485 | 47.53 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 489 | 47.54 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 490 | 47.54 | temperature | 20.0 | 30 | > th | dose independent | rect. | 9 | 17 |
| 496 | 47.55 | temperature | 20.0 | 270 | < th | dose independent | rect. | 21 | 23 |
| 503 | 47.57 | wind | 1.0 | 43200 | > th | dose independent | rect. | 22 | 8 |
| 535 | 47.61 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 537 | 47.61 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 576 | 47.67 | wind | 1.0 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 577 | 47.67 | temperature | 20.0 | 270 | < th | dose independent | rect. | 3 | 23 |
| 612 | 47.71 | temperature | 20.0 | 270 | < th | dose independent | no | NA | NA |
| 649 | 47.74 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 658 | 47.74 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 684 | 47.76 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 709 | 47.80 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 719 | 47.81 | wind | 3.0 | 43200 | < th | dose independent | rect. | 22 | 15 |
| 729 | 47.82 | temperature | 20.0 | 10 | < th | dose independent | rect. | 12 | 21 |
| 737 | 47.82 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 5 |
| 744 | 47.83 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 747 | 47.83 | temperature | 20.0 | 10 | < th | dose independent | rect. | 14 | 19 |
| 809 | 47.88 | temperature | 20.0 | 10 | < th | dose independent | rect. | 1 | 23 |
| 826 | 47.89 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 23 |
| 828 | 47.89 | wind | 3.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 851 | 47.91 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 19 |
| 898 | 47.94 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 919 | 47.95 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 14 |
| 936 | 47.96 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 989 | 48.00 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 23 |