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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0137400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1635 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.24 (0.0358) R2 : 0.343
β1 : -1.41 (0.131) R2dD : 0.172 R2D : 0.172
β2 : 0.923 (0.0854) R2dC : 0.169 R2C : 0.176
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0834 (0.0764) R2dN8 : 0.0023 R2N8 : -0.00443
σ : 0.673
deviance : 206.41
__
_____
C
peak time of C : 13.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
169.08 0.611 3.2 -1.17 1.23 -0.776 -2.96 0.852 0.0618 14.5 20.06 583 -- --
169.52 0.606 3.22 -1.2 1.21 -0.713 -2.84 -- 0.0285 14.3 20.06 527 -- --
185.94 0.635 3.23 -1.3 1.03 -0.211 -- -2.25 -0.0282 13.1 19.42 293 -- --
195.6 0.651 3.22 -1.32 1.23 -0.786 -- -- 0.00964 14.3 20 541 -- --
188.56 0.64 3.27 -1.47 -- 0.77 -- -2.43 -0.0733 -- 0.07047 280 -- --
178.67 0.627 3.23 -1.32 0.924 -- -2.65 -- -0.0668 13.5 -- -- -- --
206.41 0.673 3.24 -1.41 0.923 -- -- -- -0.0834 13.1 -- -- -- --
216.44 0.685 3.26 -1.45 -- 0.673 -- -- -0.15 -- 0.65 243 -- --
238.12 0.719 3.17 -- 1.39 -1.06 -- -- 0.206 14.3 20 526 -- --
259.34 0.752 3.25 -1.44 -- -- -- -- -0.102 -- -- -- -- --
258.46 0.752 3.2 -- 0.947 -- -- -- 0.0731 13.1 -- -- -- --
267.66 0.762 3.21 -- -- 0.723 -- -- 0.0483 -- 7.51 153 -- --
314.07 0.827 3.22 -- -- -- -- -- 0.0582 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 159.33 temperature 30.0 90 < th dose dependent rect. 10 5
2 159.70 temperature 30.0 270 < th dose dependent rect. 11 1
21 161.54 wind 3.0 90 < th dose dependent rect. 7 5
26 162.18 temperature 30.0 10 < th dose independent rect. 11 5
32 162.53 wind 3.0 90 < th dose dependent rect. 9 3
42 162.99 humidity 50.0 270 > th dose dependent rect. 11 1
53 163.40 temperature 30.0 270 < th dose independent rect. 11 1
59 163.51 wind 3.0 270 > th dose independent rect. 11 1
66 163.66 wind 1.0 10 < th dose independent rect. 11 1
74 163.92 atmosphere 1000.0 30 > th dose independent rect. 11 5
75 163.96 wind 1.0 90 < th dose dependent rect. 10 1
80 164.17 humidity 60.0 90 > th dose dependent rect. 10 5
81 164.23 humidity 80.0 90 > th dose dependent rect. 10 1
85 164.34 wind 9.0 270 < th dose independent rect. 12 23
86 164.35 temperature 30.0 10 < th dose independent rect. 11 3
88 164.38 precipitation 0.1 270 > th dose independent rect. 8 3
91 164.38 precipitation 0.1 270 > th dose dependent rect. 8 3
102 164.52 humidity 80.0 90 > th dose independent rect. 10 3
104 164.55 atmosphere 995.0 30 > th dose dependent rect. 11 5
107 164.66 wind 3.0 270 > th dose independent rect. 10 3
110 164.69 radiation 40.0 270 < th dose independent rect. 10 3
112 164.72 wind 1.0 90 < th dose independent rect. 8 4
117 164.78 wind 3.0 30 < th dose independent rect. 7 6
118 164.80 atmosphere 1005.0 10 > th dose independent rect. 11 3
123 164.89 wind 7.0 30 < th dose independent rect. 16 19
133 165.03 wind 3.0 30 > th dose independent rect. 8 8
136 165.07 wind 1.0 10 < th dose dependent rect. 11 1
142 165.08 radiation 40.0 270 < th dose dependent rect. 10 3
144 165.09 radiation 20.0 270 < th dose independent rect. 10 1
147 165.13 humidity 70.0 90 > th dose independent rect. 10 5
150 165.16 radiation 40.0 270 < th dose dependent rect. 10 1
151 165.19 radiation 40.0 270 < th dose independent rect. 11 1
158 165.27 atmosphere 995.0 270 > th dose dependent rect. 11 1
166 165.38 radiation 40.0 90 < th dose dependent rect. 10 5
173 165.56 atmosphere 1000.0 270 > th dose independent rect. 11 1
179 165.62 wind 3.0 90 < th dose dependent sin 1 NA
180 165.64 radiation 1.0 10 > th dose independent rect. 11 5
186 165.71 wind 1.0 90 < th dose independent rect. 11 1
196 165.80 wind 3.0 30 > th dose independent rect. 11 5
216 166.06 atmosphere 1015.0 30 < th dose independent rect. 16 19
238 166.19 atmosphere 995.0 30 > th dose dependent rect. 11 3
240 166.19 wind 3.0 90 < th dose dependent rect. 3 9
269 166.39 humidity 50.0 10 > th dose independent rect. 11 5
275 166.43 humidity 90.0 270 > th dose independent rect. 8 7
284 166.51 precipitation 0.1 30 < th dose independent rect. 11 5
286 166.51 precipitation 0.1 30 < th dose dependent rect. 11 5
287 166.51 humidity 50.0 270 > th dose dependent rect. 8 6
290 166.52 temperature 10.0 30 > th dose independent rect. 11 5
292 166.52 atmosphere 1015.0 30 < th dose independent rect. 11 5
293 166.52 temperature 10.0 30 > th dose independent rect. 16 19
296 166.54 wind 1.0 270 > th dose dependent rect. 10 3
311 166.62 wind 3.0 90 < th dose independent rect. 3 9
312 166.62 precipitation 0.1 30 < th dose independent rect. 16 19
315 166.62 precipitation 0.1 30 < th dose dependent rect. 16 19
364 166.77 atmosphere 995.0 30 > th dose independent rect. 16 19
382 166.87 temperature 10.0 1440 > th dose independent rect. 12 5
386 166.87 temperature 10.0 1440 > th dose independent rect. 17 19
416 167.03 wind 3.0 30 > th dose independent rect. 5 11
422 167.06 atmosphere 1005.0 10 > th dose independent rect. 11 1
423 167.07 atmosphere 1005.0 270 > th dose independent rect. 8 4
428 167.08 radiation 40.0 10 < th dose independent rect. 11 5
449 167.16 wind 1.0 720 > th dose dependent rect. 4 10
463 167.24 wind 9.0 720 < th dose dependent rect. 5 6
464 167.25 temperature 10.0 720 > th dose dependent rect. 5 6
479 167.32 radiation 1.0 270 > th dose independent rect. 11 1
504 167.46 temperature 10.0 270 > th dose independent rect. 11 1
506 167.46 atmosphere 1015.0 270 < th dose independent rect. 11 1
507 167.46 precipitation 0.1 270 < th dose independent rect. 11 1
508 167.46 temperature 10.0 270 > th dose independent rect. 12 23
509 167.46 precipitation 0.1 270 < th dose dependent rect. 11 1
518 167.51 humidity 50.0 90 > th dose dependent rect. 19 20
538 167.59 humidity 70.0 90 > th dose independent rect. 19 20
542 167.61 radiation 10.0 270 < th dose independent sin 13 NA
543 167.61 wind 9.0 30 < th dose independent rect. 11 5
546 167.62 humidity 90.0 720 < th dose independent rect. 6 5
554 167.64 wind 1.0 30 > th dose dependent rect. 11 5
605 167.82 wind 3.0 90 < th dose dependent rect. 7 11
653 167.96 wind 3.0 30 > th dose independent rect. 2 14
664 168.00 precipitation 0.1 270 < th dose independent rect. 12 23
666 168.00 precipitation 0.1 270 < th dose dependent rect. 12 23
671 168.01 wind 9.0 30 < th dose dependent rect. 16 21
689 168.05 wind 1.0 30 > th dose dependent rect. 8 8
697 168.08 humidity 50.0 10 > th dose independent rect. 16 19
706 168.11 precipitation 0.1 720 > th dose independent rect. 6 1
708 168.11 precipitation 0.1 720 > th dose dependent rect. 6 1
723 168.16 wind 3.0 720 > th dose independent rect. 4 10
748 168.23 wind 7.0 30 < th dose independent rect. 14 21
762 168.28 temperature 30.0 30 < th dose independent rect. 16 19
775 168.31 temperature 30.0 10 < th dose independent rect. 11 15
776 168.31 radiation 40.0 30 < th dose independent rect. 16 19
778 168.32 wind 3.0 30 < th dose independent sin 1 NA
817 168.43 atmosphere 1015.0 30 < th dose independent rect. 14 21
836 168.48 wind 9.0 90 < th dose dependent rect. 16 19
839 168.50 wind 7.0 30 < th dose independent rect. 16 4
848 168.51 radiation 40.0 270 < th dose dependent rect. 19 19
874 168.57 temperature 10.0 270 > th dose dependent rect. 5 14
875 168.58 temperature 20.0 720 > th dose dependent rect. 9 1
888 168.60 temperature 30.0 270 < th dose independent rect. 22 16
892 168.61 temperature 30.0 90 < th dose independent rect. 11 15
895 168.61 radiation 20.0 720 < th dose dependent rect. 18 19
904 168.64 radiation 30.0 90 < th dose independent rect. 19 20
920 168.67 wind 1.0 30 > th dose independent rect. 16 19
926 168.68 temperature 30.0 10 < th dose independent rect. 20 20
933 168.70 temperature 30.0 90 < th dose independent rect. 19 21
947 168.72 wind 9.0 270 < th dose independent rect. 11 1
955 168.74 radiation 40.0 10 < th dose independent rect. 11 3
980 168.77 humidity 90.0 30 < th dose dependent rect. 16 19
983 168.78 atmosphere 995.0 270 > th dose dependent rect. 8 6