Os04g0134800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plant peroxidase family protein.
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Os04g0134800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plant peroxidase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 285.92 | 0.794 | 3.13 | 0.618 | 0.526 | -1.19 | 0.175 | 1.37 | 0.041 | 14 | 22.9 | 19 | -- | -- |
| 286.95 | 0.789 | 3.15 | 0.449 | 0.499 | -1.06 | 0.444 | -- | -0.00328 | 13.5 | 21.92 | 13 | -- | -- |
| 286 | 0.788 | 3.13 | 0.653 | 0.524 | -1.19 | -- | 1.56 | 0.0523 | 14 | 22.8 | 18 | -- | -- |
| 287.58 | 0.79 | 3.16 | 0.424 | 0.5 | -1.06 | -- | -- | -0.0133 | 13.8 | 21.79 | 13 | -- | -- |
| 296.79 | 0.802 | 3.14 | 0.529 | -- | -0.725 | -- | 1.43 | -0.0348 | -- | 22.79 | 26 | -- | -- |
| 304.88 | 0.819 | 3.19 | 0.19 | 0.129 | -- | 0.349 | -- | -0.19 | 10.6 | -- | -- | -- | -- |
| 305.36 | 0.818 | 3.19 | 0.205 | 0.128 | -- | -- | -- | -0.188 | 11.2 | -- | -- | -- | -- |
| 297.13 | 0.803 | 3.17 | 0.325 | -- | -0.601 | -- | -- | -0.103 | -- | 22.36 | 98 | -- | -- |
| 291.84 | 0.796 | 3.17 | -- | 0.448 | -0.934 | -- | -- | -0.0868 | 13.9 | 22.8 | 12 | -- | -- |
| 306.38 | 0.818 | 3.2 | 0.202 | -- | -- | -- | -- | -0.189 | -- | -- | -- | -- | -- |
| 306.46 | 0.819 | 3.2 | -- | 0.126 | -- | -- | -- | -0.211 | 11.1 | -- | -- | -- | -- |
| 299.63 | 0.806 | 3.19 | -- | -- | -0.537 | -- | -- | -0.146 | -- | 22.8 | 99 | -- | -- |
| 307.45 | 0.818 | 3.2 | -- | -- | -- | -- | -- | -0.211 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 281.48 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 2 | 282.57 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 11 |
| 5 | 282.84 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 6 | 282.90 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 8 | 282.98 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 13 | 283.16 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 21 | 283.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 23 | 283.39 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 12 |
| 26 | 283.55 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 39 | 283.84 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 40 | 283.90 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 41 | 283.90 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 46 | 284.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 48 | 284.08 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 50 | 284.09 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 5 |
| 76 | 284.39 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 2 |
| 81 | 284.45 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 98 | 284.58 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 100 | 284.60 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 102 | 284.60 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 107 | 284.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 129 | 284.90 | temperature | 25 | 720 | > th | dose independent | rect. | 4 | 6 |
| 135 | 284.95 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 4 |
| 147 | 285.03 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 9 |
| 148 | 285.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 3 |
| 158 | 285.09 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 8 |
| 174 | 285.17 | wind | 9 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 184 | 285.20 | temperature | 25 | 270 | < th | dose independent | sin | 0 | NA |
| 189 | 285.22 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 11 |
| 206 | 285.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 18 |
| 207 | 285.32 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 2 |
| 209 | 285.33 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 221 | 285.38 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 232 | 285.42 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 9 |
| 245 | 285.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 283 | 285.67 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 9 |
| 299 | 285.72 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 13 |
| 309 | 285.74 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 12 |
| 310 | 285.74 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 15 |
| 315 | 285.75 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 316 | 285.75 | temperature | 25 | 270 | > th | dose independent | rect. | 3 | 17 |
| 318 | 285.76 | wind | 7 | 43200 | > th | dose independent | sin | 17 | NA |
| 336 | 285.80 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 12 |
| 359 | 285.84 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 15 |
| 366 | 285.86 | wind | 7 | 43200 | > th | dose dependent | rect. | 16 | 9 |
| 369 | 285.87 | temperature | 25 | 720 | < th | dose independent | rect. | 2 | 9 |
| 372 | 285.87 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 14 |
| 379 | 285.88 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 398 | 285.92 | wind | 7 | 43200 | < th | dose independent | sin | 17 | NA |
| 409 | 285.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 5 |
| 461 | 286.09 | wind | 7 | 43200 | > th | dose dependent | sin | 16 | NA |
| 519 | 286.22 | temperature | 10 | 270 | > th | dose dependent | sin | 2 | NA |
| 551 | 286.29 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 16 |
| 569 | 286.34 | temperature | 25 | 270 | > th | dose independent | sin | 0 | NA |
| 585 | 286.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 725 | 286.61 | wind | 9 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 737 | 286.63 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 749 | 286.66 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 787 | 286.72 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 813 | 286.76 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 3 |
| 835 | 286.80 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 895 | 286.88 | temperature | 30 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 919 | 286.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 925 | 286.93 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |