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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0132900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.43 (0.0331) R2 : 0.643
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.62 (0.0965) R2dE : 0.64 R2E : 0.643
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0162 (0.073) R2dN8 : -5.65e-05 R2N8 : 0.0036
σ : 0.612
deviance : 172.66
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 19.6
memory length : 27818
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
147.9 0.571 3.39 -1.03 0.79 -1.85 -2.28 4.06 -0.0682 3.58 25.2 1314 -- --
165.68 0.599 3.51 -2.02 0.472 -1.34 -1.4 -- -0.324 2.93 23.3 1722 -- --
162.91 0.594 3.39 -1.11 0.765 -1.81 -- 3.55 -0.0941 3.28 25.3 1337 -- --
168.53 0.605 3.53 -1.9 0.559 -1.48 -- -- -0.387 2.99 23.28 7278 -- --
181.32 0.627 3.4 -1.07 -- -1.77 -- 3.57 -0.116 -- 25.3 1659 -- --
233.88 0.717 3.65 -2.7 0.526 -- -2.11 -- -0.995 4.1 -- -- -- --
246.18 0.735 3.64 -2.68 0.512 -- -- -- -0.983 3.52 -- -- -- --
183.66 0.631 3.49 -1.7 -- -1.59 -- -- -0.303 -- 22.67 7550 -- --
155.52 0.581 3.43 -- 0.543 -2.65 -- -- 0.0076 2.83 19.6 27933 -- --
260.85 0.755 3.64 -2.66 -- -- -- -- -0.97 -- -- -- -- --
435.3 0.976 3.57 -- 0.46 -- -- -- -0.685 3.55 -- -- -- --
172.66 0.612 3.43 -- -- -2.62 -- -- -0.0162 -- 19.6 27818 -- --
447.09 0.987 3.58 -- -- -- -- -- -0.675 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 139.61 radiation 40.0 43200 < th dose dependent rect. 22 7
5 140.60 radiation 40.0 43200 < th dose dependent rect. 24 5
6 140.64 radiation 1.0 14400 > th dose independent rect. 8 2
7 140.64 radiation 1.0 14400 < th dose independent rect. 8 2
11 140.82 radiation 1.0 14400 < th dose dependent rect. 6 6
14 141.01 temperature 25.0 4320 < th dose independent rect. 17 1
16 141.20 humidity 50.0 43200 < th dose dependent rect. 10 1
21 141.39 temperature 25.0 4320 > th dose independent rect. 17 1
39 142.47 radiation 20.0 43200 < th dose independent rect. 17 9
40 142.47 radiation 20.0 43200 < th dose independent rect. 17 12
46 142.66 radiation 10.0 43200 < th dose dependent rect. 4 1
55 142.82 radiation 10.0 43200 < th dose independent rect. 3 4
56 142.82 radiation 10.0 43200 < th dose independent rect. 22 9
66 142.90 radiation 20.0 43200 < th dose independent rect. 17 1
68 142.95 radiation 10.0 43200 < th dose independent rect. 6 1
73 142.97 radiation 20.0 43200 < th dose independent rect. 17 6
94 143.48 radiation 1.0 43200 > th dose dependent rect. 18 11
98 143.52 temperature 25.0 4320 > th dose independent rect. 9 3
99 143.53 temperature 25.0 4320 < th dose independent rect. 9 3
102 143.62 radiation 1.0 43200 > th dose dependent rect. 5 1
113 143.64 radiation 1.0 43200 > th dose dependent rect. 18 1
191 144.38 radiation 30.0 43200 < th dose dependent rect. 18 13
192 144.39 temperature 25.0 4320 > th dose independent rect. 10 1
208 144.48 radiation 1.0 43200 < th dose dependent rect. 9 1
214 144.70 temperature 25.0 4320 < th dose independent rect. 10 1
233 145.08 humidity 50.0 43200 < th dose independent rect. 9 2
234 145.11 wind 7.0 43200 > th dose independent rect. 14 1
242 145.31 wind 7.0 43200 < th dose independent rect. 14 1
243 145.32 atmosphere 1010.0 43200 > th dose independent rect. 19 1
268 145.50 wind 7.0 43200 > th dose independent rect. 10 5
293 145.58 wind 7.0 43200 < th dose independent rect. 10 5
334 145.72 atmosphere 1010.0 43200 < th dose independent rect. 18 1
344 145.92 radiation 20.0 4320 < th dose dependent rect. 18 11
378 146.46 humidity 50.0 43200 > th dose independent rect. 9 1
383 146.52 atmosphere 1010.0 43200 < th dose independent rect. 22 1
385 146.57 temperature 25.0 1440 < th dose independent rect. 16 20
387 146.61 temperature 25.0 1440 > th dose independent rect. 16 20
397 146.67 wind 7.0 43200 > th dose independent rect. 13 3
398 146.68 humidity 70.0 43200 > th dose independent rect. 20 1
399 146.68 humidity 70.0 43200 < th dose independent rect. 20 1
411 146.89 wind 5.0 43200 > th dose dependent rect. 13 2
413 146.94 precipitation 0.1 43200 < th dose independent rect. 9 1
414 146.94 precipitation 0.1 43200 < th dose dependent rect. 9 1
421 147.01 precipitation 0.1 43200 > th dose independent rect. 9 1
423 147.01 precipitation 0.1 43200 > th dose dependent rect. 9 1
433 147.14 temperature 15.0 43200 > th dose independent rect. 2 1
457 147.17 wind 5.0 43200 > th dose dependent rect. 11 4
474 147.29 radiation 10.0 43200 < th dose independent sin 12 NA
484 147.34 precipitation 0.1 14400 > th dose independent rect. 6 1
486 147.34 precipitation 0.1 14400 > th dose dependent rect. 6 1
488 147.36 atmosphere 1010.0 43200 < th dose independent rect. 18 5
493 147.41 humidity 60.0 43200 < th dose dependent rect. 17 18
502 147.48 atmosphere 1005.0 43200 > th dose independent rect. 10 10
511 147.54 atmosphere 1010.0 43200 < th dose independent rect. 9 1
516 147.62 atmosphere 1005.0 43200 < th dose independent rect. 11 8
526 147.68 atmosphere 1005.0 43200 > th dose independent rect. 15 7
529 147.69 atmosphere 1005.0 43200 < th dose independent rect. 15 7
539 147.74 atmosphere 1005.0 43200 > th dose independent rect. 11 6
555 147.83 atmosphere 1005.0 43200 < th dose independent rect. 11 6
559 147.84 atmosphere 1010.0 43200 < th dose independent rect. 6 1
566 147.86 humidity 60.0 43200 > th dose independent rect. 17 1
605 147.99 precipitation 0.1 14400 < th dose independent rect. 5 2
608 147.99 precipitation 0.1 14400 < th dose dependent rect. 5 2
609 148.00 humidity 90.0 43200 > th dose independent rect. 23 1
626 148.06 atmosphere 1010.0 43200 < th dose independent rect. 6 4
650 148.15 temperature 15.0 43200 < th dose independent rect. 2 1
667 148.22 radiation 40.0 43200 < th dose independent sin 13 NA
682 148.29 radiation 1.0 43200 > th dose independent rect. 4 1
706 148.30 atmosphere 1010.0 43200 > th dose independent rect. 9 1
707 148.30 humidity 60.0 43200 < th dose independent rect. 15 3
709 148.31 temperature 20.0 43200 < th dose independent rect. 5 1
736 148.39 atmosphere 1010.0 43200 < th dose independent rect. 18 16
747 148.46 atmosphere 1010.0 43200 > th dose independent rect. 6 4
770 148.51 atmosphere 1010.0 43200 > th dose independent rect. 6 1
772 148.51 radiation 1.0 14400 < th dose independent rect. 6 8
794 148.57 radiation 1.0 14400 > th dose independent rect. 6 8
803 148.58 radiation 20.0 43200 > th dose dependent rect. 16 16
813 148.62 humidity 90.0 43200 > th dose independent rect. 22 3
821 148.63 radiation 1.0 43200 < th dose dependent rect. 18 3
825 148.64 atmosphere 1005.0 43200 > th dose independent rect. 15 1
839 148.67 atmosphere 1005.0 43200 < th dose independent rect. 15 2
869 148.71 precipitation 0.1 14400 > th dose independent rect. 1 8
887 148.75 radiation 20.0 43200 > th dose dependent rect. 6 1
901 148.76 temperature 20.0 43200 > th dose independent rect. 5 1
904 148.76 atmosphere 1010.0 43200 < th dose independent rect. 22 12
914 148.78 atmosphere 1010.0 43200 > th dose independent rect. 18 16
915 148.79 precipitation 0.1 14400 < th dose independent rect. 1 7
917 148.79 precipitation 0.1 14400 < th dose dependent rect. 1 7
918 148.80 atmosphere 1005.0 43200 > th dose independent sin 20 NA
950 148.88 atmosphere 1010.0 43200 > th dose independent rect. 22 1