Os04g0132500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os04g0132500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 165.21 | 0.604 | 3.6 | -1.16 | 0.414 | -0.768 | -0.809 | 2.16 | -0.825 | 11.3 | 89.37 | 250 | -- | -- |
| 173.25 | 0.613 | 3.61 | -1.08 | 0.411 | -0.688 | -1.13 | -- | -0.793 | 12.5 | 91.3 | 252 | -- | -- |
| 167.62 | 0.603 | 3.6 | -1.22 | 0.393 | -0.709 | -- | 2.31 | -0.834 | 11.6 | 89.01 | 217 | -- | -- |
| 178.39 | 0.622 | 3.61 | -1.13 | 0.426 | -0.749 | -- | -- | -0.803 | 11.8 | 91.56 | 266 | -- | -- |
| 176.97 | 0.62 | 3.6 | -1.21 | -- | -0.777 | -- | 2.32 | -0.834 | -- | 89.22 | 185 | -- | -- |
| 182.21 | 0.633 | 3.59 | -1.16 | 0.546 | -- | -1.08 | -- | -0.691 | 13.7 | -- | -- | -- | -- |
| 186.78 | 0.64 | 3.6 | -1.19 | 0.546 | -- | -- | -- | -0.697 | 13.8 | -- | -- | -- | -- |
| 187.54 | 0.638 | 3.63 | -1.14 | -- | -0.691 | -- | -- | -0.827 | -- | 89.78 | 125 | -- | -- |
| 211.43 | 0.677 | 3.59 | -- | 0.418 | -0.85 | -- | -- | -0.7 | 11.1 | 90.48 | 269 | -- | -- |
| 204.86 | 0.669 | 3.6 | -1.22 | -- | -- | -- | -- | -0.709 | -- | -- | -- | -- | -- |
| 224.41 | 0.701 | 3.57 | -- | 0.567 | -- | -- | -- | -0.564 | 13.8 | -- | -- | -- | -- |
| 220.95 | 0.692 | 3.6 | -- | -- | -0.817 | -- | -- | -0.718 | -- | 89.82 | 166 | -- | -- |
| 243.93 | 0.729 | 3.57 | -- | -- | -- | -- | -- | -0.574 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 162.61 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 2 | 162.77 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 5 | 163.66 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 4 |
| 6 | 163.67 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 7 | 163.71 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 8 | 163.72 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 10 | 163.77 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 12 | 164.16 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 2 | 11 |
| 16 | 164.24 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 23 | 17 |
| 17 | 164.24 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 21 | 19 |
| 18 | 164.24 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 19 | 21 |
| 23 | 164.27 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 3 | 13 |
| 27 | 164.30 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 24 | 7 |
| 30 | 164.33 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 11 |
| 34 | 164.39 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 9 |
| 47 | 164.68 | humidity | 90.0 | 270 | < th | dose independent | rect. | 18 | 20 |
| 48 | 164.69 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 2 | 11 |
| 49 | 164.73 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 21 | 13 |
| 60 | 164.85 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 22 | 12 |
| 91 | 165.07 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 22 | 22 |
| 98 | 165.10 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 125 | 165.28 | humidity | 90.0 | 10 | < th | dose independent | rect. | 21 | 19 |
| 133 | 165.33 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 1 | 12 |
| 136 | 165.35 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 151 | 165.42 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 8 | 7 |
| 154 | 165.43 | humidity | 90.0 | 270 | > th | dose dependent | no | NA | NA |
| 170 | 165.49 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 21 | 17 |
| 193 | 165.58 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 195 | 165.59 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 12 |
| 215 | 165.65 | humidity | 80.0 | 1440 | < th | dose independent | sin | 5 | NA |
| 246 | 165.72 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 24 | 16 |
| 248 | 165.72 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 19 | 21 |
| 253 | 165.73 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 5 | 10 |
| 269 | 165.74 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 13 |
| 291 | 165.78 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 5 |
| 296 | 165.79 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 5 | 10 |
| 353 | 165.90 | humidity | 90.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 381 | 166.06 | humidity | 80.0 | 4320 | > th | dose independent | sin | 9 | NA |
| 382 | 166.06 | humidity | 80.0 | 4320 | < th | dose independent | sin | 9 | NA |
| 388 | 166.08 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 22 | 18 |
| 397 | 166.12 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 22 | 18 |
| 399 | 166.12 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 22 | 18 |
| 415 | 166.20 | humidity | 90.0 | 270 | > th | dose independent | rect. | 21 | 22 |
| 424 | 166.24 | humidity | 90.0 | 270 | > th | dose independent | sin | 7 | NA |
| 450 | 166.31 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 456 | 166.34 | humidity | 80.0 | 1440 | > th | dose independent | sin | 5 | NA |
| 496 | 166.43 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 497 | 166.43 | humidity | 90.0 | 270 | > th | dose independent | rect. | 21 | 17 |
| 501 | 166.44 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 4 | NA |
| 504 | 166.45 | wind | 5.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 505 | 166.45 | humidity | 90.0 | 270 | > th | dose independent | rect. | 23 | 15 |
| 519 | 166.49 | humidity | 90.0 | 270 | > th | dose independent | rect. | 23 | 12 |
| 574 | 166.63 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 589 | 166.64 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 4 |
| 620 | 166.71 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 9 |
| 655 | 166.75 | humidity | 90.0 | 270 | > th | dose independent | rect. | 9 | 22 |
| 675 | 166.80 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 4 | NA |
| 686 | 166.83 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 700 | 166.86 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 22 | 14 |
| 717 | 166.89 | humidity | 90.0 | 270 | > th | dose independent | rect. | 16 | 22 |
| 729 | 166.91 | humidity | 90.0 | 10 | < th | dose independent | rect. | 23 | 17 |
| 750 | 166.94 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 759 | 166.96 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 22 | 18 |
| 774 | 167.00 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 5 | NA |
| 777 | 167.00 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 5 | NA |
| 786 | 167.02 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 5 | NA |
| 813 | 167.07 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 1 | 7 |
| 820 | 167.08 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 822 | 167.08 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 847 | 167.13 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 867 | 167.16 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 885 | 167.18 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 889 | 167.19 | humidity | 90.0 | 270 | > th | dose independent | no | NA | NA |
| 907 | 167.20 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 14 | 3 |
| 908 | 167.20 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 14 | 5 |
| 918 | 167.21 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 934 | 167.24 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 964 | 167.28 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 22 | 15 |