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Os04g0129400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0115) R2 : 0.018
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0699 (0.0242) R2dN8 : 0.0233 R2N8 : 0.018
σ : 0.216
deviance : 21.44
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
11.4 0.159 10.6 0.377 0.185 0.182 -0.275 0.589 -0.000137 2.01 -0.0175 4439 -- --
11.7 0.159 10.6 0.39 0.171 0.249 -0.253 -- 0.00677 1.94 0.2902 4560 -- --
11.68 0.159 10.6 0.388 0.184 0.177 -- 0.578 0.000872 1.91 -0.0001554 4438 -- --
11.85 0.16 10.6 0.373 0.189 0.299 -- -- -0.00438 1.51 0.2259 2482 -- --
13.71 0.172 10.6 0.39 -- 0.169 -- 0.627 0.00523 -- -0.00521 4524 -- --
13.13 0.17 10.6 0.461 0.188 -- -0.231 -- -0.0229 2 -- -- -- --
13.34 0.171 10.6 0.468 0.188 -- -- -- -0.0215 1.94 -- -- -- --
13.8 0.173 10.6 0.383 -- 0.321 -- -- 0.00303 -- 0.3315 2457 -- --
15.17 0.181 10.6 -- 0.194 0.471 -- -- -0.0247 1.61 0.2901 2771 -- --
15.46 0.184 10.6 0.476 -- -- -- -- -0.0171 -- -- -- -- --
19.11 0.204 10.6 -- 0.197 -- -- -- -0.0736 2 -- -- -- --
17.08 0.193 10.6 -- -- 0.502 -- -- -0.0188 -- 0.1241 2460 -- --
21.44 0.216 10.6 -- -- -- -- -- -0.0699 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 10.82 wind 3.0 43200 < th dose dependent rect. 5 2
2 10.85 wind 3.0 43200 < th dose dependent rect. 4 4
5 10.92 wind 1.0 43200 > th dose independent rect. 3 10
8 10.97 wind 1.0 43200 > th dose independent rect. 1 12
11 10.97 humidity 90.0 4320 > th dose dependent rect. 7 1
14 11.02 wind 1.0 43200 > th dose independent rect. 4 8
16 11.02 wind 1.0 43200 > th dose dependent rect. 5 1
17 11.03 wind 1.0 43200 < th dose independent rect. 3 10
18 11.03 wind 1.0 43200 < th dose independent rect. 24 13
24 11.05 precipitation 0.1 4320 > th dose independent rect. 24 19
25 11.05 precipitation 0.1 4320 > th dose dependent sin 3 NA
26 11.05 precipitation 0.1 4320 > th dose dependent rect. 1 16
28 11.06 wind 3.0 43200 < th dose independent rect. 5 1
31 11.06 precipitation 0.1 4320 < th dose independent rect. 1 18
36 11.06 precipitation 0.1 4320 < th dose dependent rect. 1 18
38 11.07 precipitation 0.1 4320 > th dose independent sin 2 NA
39 11.07 precipitation 0.1 4320 < th dose independent sin 2 NA
41 11.07 precipitation 0.1 4320 > th dose independent rect. 3 14
42 11.07 precipitation 0.1 4320 < th dose independent rect. 3 14
47 11.07 precipitation 0.1 4320 < th dose dependent sin 2 NA
52 11.07 precipitation 0.1 4320 < th dose dependent rect. 3 14
56 11.08 precipitation 0.1 4320 > th dose independent rect. 1 16
57 11.08 precipitation 0.1 4320 < th dose independent rect. 1 16
67 11.08 precipitation 0.1 4320 < th dose dependent rect. 1 16
83 11.09 wind 3.0 43200 < th dose dependent rect. 1 7
90 11.10 precipitation 0.1 14400 > th dose independent rect. 13 7
96 11.11 precipitation 0.1 14400 > th dose independent rect. 15 5
100 11.11 precipitation 0.1 14400 < th dose independent rect. 12 7
110 11.11 precipitation 0.1 14400 < th dose dependent rect. 12 7
115 11.11 precipitation 0.1 14400 > th dose dependent rect. 3 17
116 11.12 wind 1.0 43200 > th dose independent sin 5 NA
119 11.12 precipitation 0.1 14400 < th dose independent rect. 15 5
137 11.12 precipitation 0.1 14400 < th dose dependent rect. 15 5
145 11.13 precipitation 0.1 14400 > th dose independent rect. 15 2
147 11.13 wind 1.0 43200 > th dose independent rect. 5 6
166 11.14 wind 3.0 43200 > th dose independent rect. 5 1
168 11.14 precipitation 0.1 14400 < th dose independent rect. 15 2
184 11.14 precipitation 0.1 14400 > th dose dependent rect. 15 2
185 11.14 precipitation 0.1 14400 < th dose dependent rect. 15 2
216 11.15 temperature 25.0 270 > th dose dependent rect. 6 5
246 11.16 wind 1.0 43200 < th dose dependent rect. 3 10
249 11.16 wind 1.0 43200 < th dose dependent rect. 1 12
274 11.17 precipitation 0.1 14400 > th dose dependent rect. 13 7
286 11.18 precipitation 0.1 14400 > th dose independent sin 23 NA
288 11.18 precipitation 0.1 14400 < th dose independent sin 23 NA
299 11.18 precipitation 0.1 14400 < th dose dependent sin 23 NA
307 11.18 humidity 90.0 1440 > th dose dependent rect. 7 7
318 11.19 precipitation 0.1 4320 > th dose independent rect. 4 2
334 11.19 precipitation 0.1 4320 > th dose dependent rect. 4 2
348 11.20 precipitation 0.1 4320 < th dose independent rect. 4 2
365 11.20 precipitation 0.1 4320 < th dose dependent rect. 4 2
368 11.20 precipitation 0.1 4320 > th dose dependent rect. 4 4
380 11.21 wind 3.0 14400 < th dose independent rect. 24 1
381 11.21 precipitation 0.1 4320 > th dose independent rect. 4 4
446 11.23 precipitation 0.1 4320 < th dose independent rect. 4 4
458 11.23 precipitation 0.1 4320 < th dose dependent rect. 4 4
490 11.24 temperature 25.0 270 > th dose dependent rect. 9 1
512 11.25 precipitation 0.1 4320 > th dose independent rect. 7 1
522 11.25 precipitation 0.1 4320 > th dose dependent rect. 7 1
532 11.25 precipitation 0.1 4320 > th dose dependent rect. 3 11
536 11.26 wind 1.0 4320 > th dose independent rect. 17 2
560 11.27 wind 1.0 43200 < th dose independent sin 5 NA
574 11.27 wind 1.0 43200 < th dose dependent sin 3 NA
584 11.27 wind 1.0 43200 < th dose dependent rect. 5 8
593 11.27 wind 1.0 43200 < th dose dependent rect. 1 16
603 11.28 precipitation 0.1 4320 < th dose independent rect. 3 11
618 11.28 precipitation 0.1 4320 < th dose dependent rect. 3 11
622 11.28 wind 1.0 43200 < th dose dependent rect. 1 19
628 11.29 wind 3.0 14400 > th dose independent rect. 24 1
638 11.29 precipitation 0.1 4320 > th dose independent rect. 3 11
649 11.29 wind 1.0 14400 > th dose dependent rect. 24 1
715 11.30 wind 1.0 43200 < th dose dependent rect. 3 19
729 11.31 wind 1.0 43200 < th dose independent rect. 1 8
771 11.31 wind 1.0 43200 < th dose dependent rect. 3 15
784 11.32 precipitation 0.1 4320 < th dose independent rect. 7 1
806 11.32 precipitation 0.1 4320 < th dose dependent rect. 7 1
823 11.32 wind 1.0 43200 < th dose dependent rect. 3 17
824 11.32 precipitation 0.1 14400 > th dose dependent rect. 13 17
837 11.32 precipitation 0.1 14400 > th dose dependent rect. 9 21
848 11.32 precipitation 0.1 14400 > th dose dependent rect. 7 23
873 11.33 precipitation 0.1 14400 > th dose dependent no NA NA
874 11.33 humidity 90.0 14400 > th dose dependent rect. 9 1
903 11.33 precipitation 0.1 14400 > th dose dependent rect. 15 23
905 11.34 wind 1.0 4320 < th dose independent rect. 18 1