FiT-DB / Search/ Help/ Sample detail

Os04g0128900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Flavin monoxygenase-like protein floozy.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.53 (0.0494) R2 : 0.529
β1 : 0.39 (0.281) R2dD : 0.00644 R2D : 0.0529
β2 : 0.227 (0.119) R2dC : 0.00484 R2C : 0.037
β3 : 2.56 (0.203) R2dE : 0.419 R2E : 0.257
β4 : 2.99 (0.431) R2dD*C : 0.0534 R2D*C : 0.03
β5 : -10.3 (1.59) R2dD*E : 0.181 R2D*E : -0.0673
γ1 : 0.519 (0.102) R2dN8 : 0.0434 R2N8 : 0.0376
σ : 0.819
deviance : 303.55
__
_____
C
peak time of C : 1.98
E
wheather : temperature
threshold : 24.84
memory length : 671
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 0.985

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
303.55 0.819 7.53 0.39 0.227 2.56 2.99 -10.3 0.519 1.98 24.84 671 18 0.985
331.07 0.847 7.54 1.89 0.305 1.65 2.22 -- 0.551 1.31 23.28 663 18.2 0.867
334.13 0.851 7.51 0.516 0.31 2.52 -- -8.92 0.551 0.481 25.22 673 18.1 0.949
342.6 0.862 7.43 1.83 0.357 1.7 -- -- 0.648 23.8 22.61 665 18.2 0.75
337.09 0.855 7.53 0.483 -- 2.62 -- -8.77 0.486 -- 24.7 665 18.3 0.75
411.96 0.952 7.38 2.14 1.02 -- 2.48 -- 0.817 0.851 -- -- -- --
436.55 0.978 7.4 2.05 1.02 -- -- -- 0.807 0.217 -- -- -- --
342.93 0.862 7.43 1.81 -- 1.83 -- -- 0.678 -- 22.41 669 18.1 0.883
425.85 0.961 7.41 -- 0.346 1.86 -- -- 0.563 22.3 23.27 685 17.9 1.17
501.92 1.05 7.38 2.08 -- -- -- -- 0.823 -- -- -- -- --
547.25 1.09 7.45 -- 1.05 -- -- -- 0.579 0.323 -- -- -- --
423.67 0.959 7.46 -- -- 2.01 -- -- 0.471 -- 22.5 688 17.7 1.33
616.34 1.16 7.43 -- -- -- -- -- 0.592 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 312.43 temperature 25 720 > th dose dependent rect. 18 1
3 319.19 temperature 25 720 > th dose independent rect. 17 2
6 322.28 temperature 25 720 > th dose dependent rect. 16 5
9 323.20 temperature 25 720 > th dose dependent rect. 16 7
18 325.38 temperature 20 30 > th dose dependent rect. 18 11
21 327.03 temperature 25 720 > th dose dependent sin 14 NA
41 330.07 radiation 1 720 > th dose independent rect. 17 12
43 330.18 radiation 1 720 > th dose independent rect. 17 2
58 331.08 radiation 1 720 < th dose dependent rect. 16 8
94 334.55 radiation 1 720 < th dose dependent rect. 7 18
102 335.12 humidity 80 720 < th dose independent rect. 17 2
117 336.38 radiation 1 720 < th dose independent rect. 16 8
132 337.49 wind 9 4320 > th dose independent rect. 4 12
154 338.74 temperature 25 720 > th dose independent rect. 14 10
156 338.96 wind 9 4320 > th dose independent rect. 10 6
159 339.06 wind 9 4320 > th dose dependent rect. 5 9
163 339.24 wind 9 4320 > th dose dependent rect. 4 12
165 339.30 wind 7 4320 > th dose dependent rect. 12 4
167 339.35 wind 7 4320 > th dose dependent rect. 12 2
168 339.38 temperature 25 720 < th dose independent rect. 15 9
177 339.73 wind 9 4320 > th dose independent rect. 12 4
178 339.76 wind 9 4320 < th dose independent rect. 3 13
186 339.96 wind 9 4320 < th dose independent rect. 1 15
218 340.50 wind 9 4320 > th dose dependent rect. 10 4
219 340.50 wind 9 4320 > th dose dependent rect. 10 6
231 340.61 wind 7 4320 < th dose independent rect. 12 2
243 340.78 wind 9 4320 < th dose independent rect. 23 17
268 341.24 wind 9 4320 < th dose independent rect. 12 4
278 341.39 temperature 25 90 > th dose independent rect. 17 12
316 342.23 wind 9 4320 < th dose independent rect. 10 6
334 342.44 radiation 1 720 < th dose dependent sin 17 NA
336 342.47 wind 9 4320 > th dose independent sin 3 NA
338 342.49 wind 9 4320 < th dose independent rect. 8 8
365 342.72 radiation 1 720 > th dose independent rect. 7 22
368 342.78 radiation 1 720 > th dose independent rect. 7 12
404 343.17 temperature 25 720 > th dose independent sin 17 NA
407 343.19 wind 9 4320 > th dose dependent sin 3 NA
428 343.47 radiation 1 720 > th dose independent rect. 9 20
431 343.49 radiation 1 720 > th dose independent rect. 9 10
451 343.74 wind 9 4320 > th dose independent rect. 18 22
543 344.98 wind 9 4320 > th dose independent rect. 15 1
581 345.47 temperature 25 720 < th dose independent sin 17 NA
606 345.69 wind 9 4320 < th dose independent sin 3 NA
651 346.19 wind 7 4320 > th dose dependent rect. 15 1
668 346.42 wind 9 4320 > th dose dependent rect. 18 22
742 347.43 temperature 25 270 > th dose independent sin 14 NA
799 347.97 wind 9 4320 < th dose independent rect. 18 22
883 348.68 temperature 25 270 < th dose independent sin 13 NA
928 348.96 wind 9 4320 < th dose independent rect. 15 1