Os04g0128400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome P450 family protein.
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Os04g0128400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome P450 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 325.17 | 0.847 | 4.58 | 2.35 | 0.259 | -1.1 | 1.15 | 3.82 | 0.134 | 10.4 | 20.3 | 1184 | -- | -- |
| 333.13 | 0.857 | 4.7 | 1.33 | 0.839 | -1.63 | 0.661 | -- | -0.128 | 13.1 | 11.99 | 680 | -- | -- |
| 328.93 | 0.845 | 4.57 | 2.42 | 0.345 | -1.02 | -- | 3.63 | 0.165 | 11.8 | 20.86 | 1409 | -- | -- |
| 334.6 | 0.852 | 4.71 | 1.36 | 0.267 | -1.38 | -- | -- | -0.151 | 14.8 | 4.35 | 815 | -- | -- |
| 333.64 | 0.851 | 4.62 | 2.27 | -- | -1.19 | -- | 3.29 | 0.0976 | -- | 20.43 | 1049 | -- | -- |
| 358.19 | 0.887 | 4.75 | 1 | 0.411 | -- | 0.713 | -- | -0.358 | 11.4 | -- | -- | -- | -- |
| 360.15 | 0.889 | 4.75 | 1.04 | 0.412 | -- | -- | -- | -0.353 | 12.1 | -- | -- | -- | -- |
| 337.79 | 0.856 | 4.71 | 1.42 | -- | -1.44 | -- | -- | -0.129 | -- | 10.23 | 900 | -- | -- |
| 378.31 | 0.911 | 4.75 | -- | 0.651 | -0.805 | -- | -- | -0.351 | 12.9 | 18.8 | 680 | -- | -- |
| 370.82 | 0.9 | 4.76 | 1.02 | -- | -- | -- | -- | -0.359 | -- | -- | -- | -- | -- |
| 388.4 | 0.922 | 4.78 | -- | 0.398 | -- | -- | -- | -0.469 | 11.9 | -- | -- | -- | -- |
| 383.89 | 0.913 | 4.76 | -- | -- | -0.707 | -- | -- | -0.361 | -- | 19.7 | 860 | -- | -- |
| 398.39 | 0.932 | 4.79 | -- | -- | -- | -- | -- | -0.473 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 300.29 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 3 | 303.00 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 5 | 304.96 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 7 | 307.32 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 8 | 307.41 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 9 | 307.60 | wind | 5.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 12 | 307.88 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 10 |
| 17 | 308.59 | wind | 5.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 19 | 308.78 | wind | 5.0 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 27 | 309.21 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 29 | 309.40 | wind | 5.0 | 43200 | < th | dose independent | rect. | 14 | 7 |
| 44 | 309.95 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 13 | 8 |
| 57 | 310.24 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 94 | 310.96 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 141 | 311.63 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 144 | 311.70 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 2 | 4 |
| 176 | 312.07 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 218 | 312.52 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 287 | 313.19 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 13 | 9 |
| 295 | 313.26 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 363 | 313.71 | wind | 5.0 | 43200 | < th | dose independent | sin | 18 | NA |
| 382 | 313.81 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 10 |
| 383 | 313.81 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 11 | 10 |
| 384 | 313.84 | wind | 5.0 | 43200 | > th | dose independent | sin | 18 | NA |
| 493 | 314.58 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 499 | 314.63 | wind | 3.0 | 43200 | > th | dose dependent | sin | 19 | NA |
| 543 | 314.93 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 613 | 315.31 | radiation | 30.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 621 | 315.36 | atmosphere | 1005.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 645 | 315.46 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 705 | 315.64 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 706 | 315.64 | atmosphere | 1010.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 718 | 315.69 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 738 | 315.77 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 751 | 315.83 | atmosphere | 1005.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 843 | 316.11 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 915 | 316.38 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 932 | 316.49 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 7 | 1 |