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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0127500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : EGF domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.08 (0.0637) R2 : 0.882
β1 : 0.759 (0.459) R2dD : 0.00814 R2D : -0.219
β2 : 1.54 (0.0932) R2dC : 0.0713 R2C : -0.254
β3 : -1.24 (0.303) R2dE : 0.0267 R2E : -0.297
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 17.3 (2.34) R2dD*E : 0.199 R2D*E : -0.0913
γ1 : -3.86 (0.0987) R2dN8 : 0.797 R2N8 : 0.574
σ : 0.703
deviance : 228.09
__
_____
C
peak time of C : 2.64
E
wheather : temperature
threshold : 29.7
memory length : 3776
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
227.78 0.709 7.07 0.76 1.54 -1.25 0.303 17.3 -3.86 2.65 29.7 3769 -- --
265.91 0.765 6.69 3.84 1.31 0.442 -0.133 -- -3.39 2.52 29.7 3769 -- --
228.09 0.703 7.08 0.759 1.54 -1.24 -- 17.3 -3.86 2.64 29.7 3776 -- --
245.13 0.729 6.67 4.01 1.48 0.892 -- -- -3.32 2.2 29.6 901 -- --
341.2 0.865 6.72 3.61 -- 0.808 -- 3.59 -3.42 -- 29.7 3776 -- --
273.36 0.775 6.69 3.78 1.47 -- 0.0219 -- -3.39 2.56 -- -- -- --
273.36 0.774 6.69 3.78 1.47 -- -- -- -3.39 2.56 -- -- -- --
279.9 0.779 6.54 4.1 -- 1.16 -- -- -2.77 -- 25 29 -- --
635.97 1.17 6.8 -- 1.5 1.31 -- -- -3.86 2.3 35.11 707 -- --
400.39 0.935 6.68 3.84 -- -- -- -- -3.35 -- -- -- -- --
649.14 1.19 6.78 -- 1.55 -- -- -- -3.81 2.59 -- -- -- --
717.32 1.25 6.67 -- -- 0.876 -- -- -3.34 -- 25 29 -- --
789.05 1.31 6.77 -- -- -- -- -- -3.78 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 225.35 atmosphere 995.0 43200 < th dose dependent rect. 13 13
2 226.34 atmosphere 995.0 43200 > th dose independent rect. 21 19
5 226.52 temperature 25.0 30 < th dose independent rect. 13 18
12 227.37 temperature 25.0 4320 > th dose dependent rect. 7 2
17 227.65 atmosphere 995.0 43200 < th dose independent rect. 18 22
21 227.80 atmosphere 1000.0 43200 < th dose dependent rect. 7 1
22 227.90 atmosphere 1000.0 43200 < th dose dependent rect. 6 5
23 227.95 temperature 25.0 4320 > th dose dependent rect. 2 7
25 228.01 temperature 25.0 4320 > th dose independent rect. 6 2
28 228.02 temperature 25.0 4320 < th dose independent rect. 6 3
31 228.04 atmosphere 995.0 43200 < th dose independent rect. 21 20
34 228.06 atmosphere 1000.0 43200 < th dose dependent rect. 10 1
50 228.32 wind 9.0 43200 < th dose independent rect. 20 7
51 228.33 radiation 10.0 14400 > th dose independent rect. 9 1
55 228.43 temperature 25.0 4320 > th dose dependent rect. 19 16
61 228.52 temperature 30.0 1440 < th dose independent rect. 12 2
63 228.54 wind 1.0 14400 > th dose independent rect. 2 1
79 228.67 wind 9.0 43200 < th dose independent rect. 20 4
111 228.97 temperature 25.0 720 > th dose dependent rect. 20 15
117 229.05 wind 9.0 43200 > th dose independent rect. 20 4
131 229.17 wind 9.0 43200 > th dose independent rect. 20 6
159 229.50 wind 9.0 43200 > th dose dependent rect. 20 9
160 229.51 wind 9.0 43200 > th dose independent rect. 20 9
164 229.57 temperature 25.0 4320 > th dose independent rect. 2 7
188 229.78 wind 7.0 43200 > th dose dependent rect. 20 4
197 229.88 temperature 25.0 4320 > th dose dependent sin 9 NA
220 230.04 wind 9.0 43200 > th dose dependent rect. 20 7
228 230.11 wind 1.0 14400 < th dose independent rect. 2 1
267 230.45 temperature 25.0 720 > th dose dependent sin 9 NA
272 230.49 atmosphere 995.0 43200 < th dose independent no NA NA
274 230.49 atmosphere 995.0 43200 < th dose independent rect. 7 23
281 230.54 temperature 30.0 1440 < th dose independent rect. 4 10
283 230.54 atmosphere 1000.0 43200 < th dose dependent sin 0 NA
286 230.56 temperature 30.0 1440 < th dose independent rect. 9 5
287 230.57 temperature 30.0 1440 < th dose independent rect. 1 13
291 230.61 atmosphere 1000.0 43200 < th dose independent rect. 18 1
302 230.65 temperature 25.0 720 > th dose dependent rect. 13 5
309 230.71 temperature 25.0 720 > th dose dependent rect. 13 3
320 230.76 wind 5.0 14400 < th dose independent rect. 8 1
321 230.77 temperature 30.0 1440 > th dose independent rect. 13 1
326 230.79 wind 7.0 43200 > th dose dependent rect. 19 1
332 230.81 temperature 30.0 1440 < th dose independent rect. 21 17
352 230.97 wind 1.0 14400 < th dose dependent rect. 2 1
390 231.29 atmosphere 995.0 43200 > th dose independent no NA NA
395 231.30 wind 9.0 43200 > th dose dependent rect. 17 14
401 231.38 atmosphere 995.0 43200 < th dose independent rect. 1 23
410 231.40 humidity 60.0 10 > th dose dependent rect. 1 23
413 231.43 atmosphere 995.0 43200 > th dose independent rect. 7 23
440 231.66 wind 5.0 14400 > th dose independent rect. 8 1
445 231.70 humidity 50.0 1440 > th dose dependent rect. 13 1
455 231.76 temperature 25.0 720 > th dose dependent rect. 13 20
476 231.84 atmosphere 995.0 43200 > th dose independent rect. 2 23
480 231.86 atmosphere 995.0 43200 < th dose independent rect. 16 20
494 231.93 atmosphere 995.0 43200 < th dose dependent sin 16 NA
504 231.98 wind 5.0 43200 > th dose independent rect. 21 1
543 232.20 temperature 25.0 720 > th dose dependent rect. 20 22
565 232.31 atmosphere 995.0 43200 > th dose independent rect. 12 23
568 232.32 wind 5.0 43200 < th dose independent rect. 21 1
582 232.39 temperature 30.0 14400 < th dose independent rect. 15 1
589 232.42 precipitation 0.1 43200 > th dose independent rect. 5 13
615 232.52 precipitation 0.1 43200 < th dose independent rect. 5 13
617 232.52 precipitation 0.1 43200 < th dose dependent rect. 5 13
624 232.54 temperature 25.0 270 > th dose dependent sin 11 NA
638 232.61 temperature 30.0 14400 > th dose independent rect. 15 1
658 232.72 humidity 50.0 720 > th dose dependent rect. 10 20
661 232.73 temperature 30.0 14400 < th dose independent rect. 18 15
680 232.80 atmosphere 995.0 43200 < th dose dependent rect. 13 19
693 232.86 temperature 30.0 14400 > th dose dependent rect. 17 2
707 232.87 humidity 90.0 1440 < th dose dependent rect. 13 1
710 232.88 atmosphere 1000.0 43200 > th dose independent rect. 18 1
720 232.90 humidity 50.0 720 > th dose dependent rect. 10 18
771 233.08 temperature 25.0 720 > th dose dependent rect. 5 23
772 233.09 temperature 30.0 14400 < th dose independent rect. 15 18
773 233.09 temperature 25.0 720 > th dose dependent no NA NA
786 233.14 temperature 30.0 14400 < th dose independent rect. 23 10
787 233.14 temperature 30.0 14400 > th dose independent rect. 15 18
808 233.20 humidity 60.0 1440 > th dose dependent rect. 11 3
829 233.28 temperature 30.0 14400 < th dose independent rect. 21 12
838 233.29 temperature 25.0 720 > th dose dependent rect. 11 17
848 233.31 temperature 25.0 4320 > th dose dependent rect. 6 23
850 233.32 temperature 25.0 4320 > th dose dependent no NA NA
852 233.32 temperature 25.0 4320 > th dose dependent rect. 23 23
863 233.35 wind 9.0 43200 > th dose independent rect. 17 13
962 233.51 temperature 30.0 720 > th dose dependent rect. 9 8
978 233.52 temperature 30.0 14400 > th dose independent rect. 18 15
980 233.52 temperature 25.0 4320 > th dose dependent rect. 10 23