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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0127300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase S8 and S53, subtilisin, kexin, sedolisin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.11 (0.0503) R2 : 0.53
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.48 (0.134) R2dC : 0.142 R2C : 0.201
β3 : 2.05 (0.193) R2dE : 0.134 R2E : 0.22
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.12 (0.107) R2dN8 : 0.152 R2N8 : 0.162
σ : 0.937
deviance : 404.61
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_____
C
peak time of C : 20.3
E
wheather : temperature
threshold : 30.33
memory length : 375
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
398.78 0.938 4.05 0.825 1.53 1.25 0.745 6.16 -1.09 20.2 30.33 345 -- --
400.15 0.932 4.1 0.357 1.5 1.94 0.717 -- -1.12 20.2 30.3 345 -- --
400.18 0.932 4.04 0.836 1.5 1.26 -- 6.73 -1.09 20.2 30.36 375 -- --
402.03 0.934 4.1 0.323 1.49 2.01 -- -- -1.09 20.2 30.4 375 -- --
502.75 1.04 3.99 0.736 -- 2.02 -- 6.63 -1.08 -- 30.09 466 -- --
476.76 1.02 4.15 0.625 2.03 -- 1.97 -- -1.25 19.5 -- -- -- --
487.42 1.03 4.15 0.578 2.03 -- -- -- -1.25 19.6 -- -- -- --
505.01 1.05 4.05 0.195 -- 2.78 -- -- -1.08 -- 30.15 468 -- --
404.61 0.937 4.11 -- 1.48 2.05 -- -- -1.12 20.3 30.33 375 -- --
708.46 1.24 4.1 0.548 -- -- -- -- -1.28 -- -- -- -- --
496.21 1.04 4.16 -- 2.03 -- -- -- -1.31 19.6 -- -- -- --
506 1.05 4.06 -- -- 2.8 -- -- -1.1 -- 30.14 468 -- --
716.38 1.25 4.11 -- -- -- -- -- -1.34 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 392.08 temperature 30 720 > th dose independent rect. 8 6
17 393.49 temperature 30 720 > th dose independent rect. 11 3
19 395.80 temperature 30 720 < th dose independent rect. 7 5
20 396.08 temperature 30 270 < th dose independent rect. 7 23
21 396.83 temperature 30 30 < th dose independent rect. 11 15
23 397.10 temperature 30 720 < th dose independent rect. 20 16
24 397.99 temperature 30 270 < th dose independent rect. 14 23
25 398.12 temperature 30 270 < th dose independent rect. 7 12
26 398.38 temperature 30 720 < th dose independent rect. 24 12
44 399.67 temperature 30 720 < th dose independent rect. 3 9
47 400.00 temperature 30 270 < th dose independent rect. 7 10
48 400.15 temperature 30 720 < th dose independent rect. 5 7
49 400.18 temperature 30 720 < th dose independent rect. 9 3
56 400.85 temperature 30 720 > th dose dependent rect. 8 5
72 401.22 temperature 30 270 < th dose independent rect. 7 19
73 401.23 temperature 30 720 > th dose independent sin 7 NA
95 401.85 temperature 30 270 > th dose independent rect. 10 23
96 402.00 temperature 30 270 > th dose independent sin 22 NA
98 402.14 temperature 30 270 < th dose independent rect. 16 23
102 402.28 temperature 30 270 > th dose independent rect. 10 9
133 402.43 temperature 30 720 > th dose dependent sin 7 NA
134 402.44 temperature 30 720 < th dose independent rect. 18 18
137 402.50 temperature 30 270 > th dose independent no NA NA
232 402.71 temperature 30 270 < th dose independent rect. 7 14
253 403.48 temperature 30 270 > th dose independent rect. 15 23
254 403.50 temperature 30 270 < th dose independent no NA NA
261 403.74 temperature 30 270 < th dose independent rect. 20 23
268 404.04 temperature 30 270 < th dose independent rect. 4 23
273 404.19 temperature 30 270 < th dose independent rect. 18 23
305 405.33 temperature 30 270 < th dose independent sin 22 NA
400 406.54 temperature 25 270 > th dose dependent rect. 11 11
421 407.26 temperature 25 10 > th dose dependent rect. 13 18
431 407.64 temperature 30 270 > th dose dependent rect. 15 23
474 408.33 temperature 25 270 > th dose dependent rect. 11 20
487 408.58 temperature 30 270 > th dose dependent sin 1 NA
515 409.11 temperature 30 270 > th dose dependent rect. 18 23
531 409.51 temperature 25 270 > th dose dependent sin 20 NA
559 409.69 temperature 30 270 > th dose dependent no NA NA
763 410.72 temperature 30 720 < th dose independent sin 8 NA
789 411.25 atmosphere 1005 90 > th dose dependent rect. 11 11
793 411.42 temperature 30 720 < th dose independent rect. 24 17
796 411.53 temperature 25 10 > th dose dependent sin 15 NA
802 411.66 temperature 30 270 < th dose independent rect. 24 23
810 411.83 temperature 25 10 > th dose dependent rect. 13 11
840 412.09 temperature 25 10 > th dose dependent rect. 13 9
867 412.36 atmosphere 1010 90 < th dose dependent rect. 13 8
935 413.06 temperature 25 10 > th dose dependent rect. 13 7
942 413.16 temperature 25 10 > th dose dependent rect. 13 16
944 413.18 temperature 30 270 < th dose independent rect. 10 23
967 413.55 temperature 30 720 < th dose independent rect. 24 19
983 413.74 temperature 15 30 > th dose dependent rect. 2 18