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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0127200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Subtilase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.54 (0.0267) R2 : 0.95
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -5.22 (0.0563) R2dN8 : 1.23 R2N8 : 0.95
σ : 0.504
deviance : 116.47
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
94.17 0.456 8.58 -0.575 0.186 -0.668 -0.634 2.56 -5.3 1.11 1.1 16 -- --
99.6 0.465 8.57 -0.481 0.195 -0.472 -0.878 -- -5.3 1.74 1.099 16 -- --
95.76 0.456 8.58 -0.561 0.186 -0.675 -- 2.81 -5.29 0.87 1.1 16 -- --
102.57 0.472 8.55 -0.448 0.201 -0.465 -- -- -5.26 1.41 1.001 16 -- --
97.82 0.461 8.58 -0.565 -- -0.751 -- 2.85 -5.29 -- 1.093 16 -- --
104.64 0.48 8.56 -0.414 0.305 -- -0.847 -- -5.27 2.39 -- -- -- --
107.25 0.485 8.55 -0.391 0.304 -- -- -- -5.27 2.5 -- -- -- --
104.86 0.477 8.56 -0.464 -- -0.549 -- -- -5.27 -- 1.065 16 -- --
107.75 0.483 8.55 -- 0.21 -0.397 -- -- -5.22 1.56 1.034 16 -- --
112.7 0.496 8.55 -0.378 -- -- -- -- -5.26 -- -- -- -- --
111.28 0.493 8.54 -- 0.297 -- -- -- -5.22 2.48 -- -- -- --
110.15 0.489 8.55 -- -- -0.484 -- -- -5.23 -- 1 16 -- --
116.47 0.504 8.54 -- -- -- -- -- -5.22 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 76.62 radiation 1.0 14400 < th dose dependent rect. 3 1
7 77.54 humidity 80.0 30 > th dose dependent rect. 2 1
8 77.55 humidity 90.0 30 > th dose independent rect. 2 1
12 77.60 wind 9.0 1440 < th dose independent rect. 3 1
13 77.60 temperature 10.0 1440 > th dose independent rect. 3 1
16 77.60 temperature 30.0 1440 < th dose independent rect. 3 1
20 77.60 humidity 50.0 1440 > th dose independent rect. 3 1
29 77.60 atmosphere 995.0 1440 > th dose independent rect. 3 1
30 77.60 radiation 1.0 1440 < th dose independent rect. 3 1
50 77.60 temperature 10.0 1440 > th dose independent rect. 4 23
53 77.60 radiation 1.0 1440 < th dose dependent rect. 3 1
62 77.61 wind 3.0 30 < th dose independent rect. 2 1
68 77.66 wind 7.0 30 < th dose dependent rect. 2 1
70 77.68 atmosphere 1005.0 30 > th dose dependent rect. 2 1
73 77.69 atmosphere 995.0 30 > th dose dependent rect. 2 1
75 77.70 atmosphere 1000.0 30 > th dose independent rect. 2 1
78 77.71 temperature 10.0 30 > th dose independent rect. 2 1
80 77.71 temperature 30.0 30 < th dose independent rect. 2 1
81 77.71 humidity 50.0 30 > th dose independent rect. 2 1
85 77.71 atmosphere 1010.0 30 < th dose independent rect. 2 1
87 77.71 radiation 1.0 30 < th dose independent rect. 2 1
92 77.71 precipitation 0.1 30 < th dose independent rect. 2 1
93 77.71 temperature 10.0 30 > th dose independent rect. 3 23
94 77.71 temperature 10.0 30 > th dose dependent rect. 2 1
95 77.71 radiation 1.0 30 < th dose dependent rect. 2 1
100 77.71 precipitation 0.1 30 < th dose dependent rect. 2 1
103 77.75 wind 1.0 30 > th dose independent rect. 2 1
108 77.79 atmosphere 1015.0 30 < th dose dependent rect. 2 1
110 77.80 atmosphere 995.0 30 > th dose independent rect. 3 23
113 77.84 temperature 30.0 30 < th dose dependent rect. 2 1
118 78.03 wind 9.0 30 < th dose independent rect. 3 23
134 78.32 precipitation 0.1 30 < th dose independent rect. 3 23
135 78.32 precipitation 0.1 30 < th dose dependent rect. 3 23
187 84.12 temperature 10.0 30 > th dose dependent rect. 3 23
202 86.73 humidity 50.0 30 > th dose independent rect. 3 23
204 86.96 atmosphere 1015.0 30 < th dose independent rect. 3 23
208 87.37 temperature 30.0 30 < th dose independent rect. 3 23
293 92.31 humidity 90.0 90 < th dose independent rect. 2 1
297 92.45 wind 1.0 10 < th dose independent rect. 2 6
307 92.99 wind 1.0 30 > th dose independent rect. 3 23
309 93.14 atmosphere 1015.0 1440 < th dose independent rect. 3 1
325 93.54 humidity 90.0 10 > th dose independent rect. 2 10
365 93.78 precipitation 0.1 720 < th dose independent rect. 23 16
367 93.78 precipitation 0.1 720 < th dose dependent rect. 23 16
376 94.05 precipitation 0.1 720 < th dose independent rect. 3 8
377 94.05 precipitation 0.1 720 < th dose dependent rect. 3 8
378 94.07 wind 1.0 10 > th dose independent sin 12 NA
380 94.08 wind 9.0 30 < th dose dependent rect. 3 23
388 94.24 atmosphere 1015.0 720 < th dose independent rect. 3 8
422 94.60 wind 1.0 10 < th dose independent rect. 2 20
429 94.71 wind 1.0 10 < th dose independent rect. 2 10
434 94.78 wind 1.0 10 < th dose independent rect. 2 16
438 94.83 wind 1.0 30 > th dose dependent rect. 2 1
443 94.88 temperature 25.0 270 > th dose independent rect. 23 4
445 94.89 wind 1.0 10 < th dose independent rect. 2 14
457 95.01 humidity 90.0 10 > th dose independent rect. 24 12
482 95.19 temperature 15.0 720 > th dose independent rect. 3 8
515 95.50 wind 3.0 30 < th dose dependent rect. 2 7
516 95.51 wind 1.0 10 < th dose independent rect. 6 22
526 95.72 temperature 15.0 720 > th dose independent rect. 23 16
530 95.80 wind 1.0 10 > th dose independent no NA NA
536 95.87 wind 1.0 10 > th dose independent rect. 21 23
569 96.28 temperature 25.0 270 > th dose dependent rect. 23 4
582 96.46 temperature 10.0 90 > th dose dependent rect. 3 14
592 96.58 wind 1.0 10 > th dose independent rect. 19 23
594 96.60 humidity 90.0 10 > th dose independent sin 4 NA
601 96.64 humidity 90.0 10 < th dose independent sin 5 NA
603 96.64 wind 9.0 720 < th dose independent rect. 3 8
607 96.67 humidity 90.0 10 < th dose independent rect. 24 17
630 96.83 humidity 50.0 720 > th dose independent rect. 3 8
632 96.83 wind 1.0 10 > th dose independent rect. 21 14
633 96.84 temperature 10.0 720 > th dose independent rect. 15 8
645 96.91 atmosphere 995.0 720 > th dose independent rect. 23 16
659 97.00 humidity 90.0 10 > th dose independent rect. 2 6
670 97.05 precipitation 0.1 720 < th dose independent rect. 15 8
672 97.05 precipitation 0.1 720 < th dose dependent rect. 15 8
679 97.08 humidity 90.0 10 > th dose independent rect. 22 16
684 97.08 temperature 15.0 90 > th dose dependent rect. 8 17
711 97.10 humidity 90.0 10 > th dose independent rect. 22 14
714 97.11 humidity 50.0 10 > th dose dependent rect. 2 12
719 97.13 atmosphere 1015.0 720 < th dose independent rect. 23 16
729 97.17 atmosphere 995.0 720 > th dose independent rect. 3 8
730 97.17 temperature 10.0 720 > th dose independent rect. 11 16
737 97.19 humidity 80.0 10 > th dose dependent rect. 2 12
739 97.20 radiation 10.0 30 < th dose independent rect. 3 23
741 97.20 radiation 40.0 90 < th dose dependent rect. 11 16
783 97.35 humidity 90.0 10 < th dose independent rect. 24 23
791 97.36 humidity 50.0 10 > th dose dependent rect. 2 10
793 97.37 temperature 15.0 720 > th dose independent rect. 3 12
810 97.40 humidity 90.0 10 < th dose independent rect. 21 23
833 97.46 humidity 90.0 10 < th dose independent rect. 24 13
847 97.51 radiation 40.0 90 < th dose independent rect. 1 12
854 97.53 wind 1.0 10 < th dose independent sin 14 NA
889 97.59 temperature 20.0 90 > th dose independent rect. 9 16
890 97.59 humidity 50.0 270 > th dose dependent rect. 22 14
894 97.60 wind 9.0 720 < th dose independent rect. 15 8
898 97.61 wind 1.0 10 > th dose independent rect. 21 10
913 97.65 humidity 90.0 10 > th dose independent rect. 20 18
925 97.67 humidity 90.0 10 > th dose independent rect. 20 16
928 97.67 humidity 90.0 10 < th dose independent rect. 19 23
932 97.68 wind 1.0 720 > th dose independent rect. 15 8
977 97.78 radiation 40.0 90 < th dose independent rect. 11 16