Os04g0127100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0127100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 261.4 | 0.76 | 3.87 | 0.318 | 0.264 | 1.56 | 0.151 | -1.75 | 0.346 | 7.65 | 24.79 | 1479 | -- | -- |
| 267.64 | 0.762 | 3.93 | 0.0285 | 0.202 | 1.56 | 0.0723 | -- | 0.14 | 6.97 | 24.7 | 1542 | -- | -- |
| 261.44 | 0.753 | 3.87 | 0.326 | 0.26 | 1.56 | -- | -1.76 | 0.347 | 7.78 | 24.77 | 1486 | -- | -- |
| 265.24 | 0.759 | 3.93 | -0.171 | 0.223 | 1.44 | -- | -- | 0.211 | 7.9 | 24.7 | 1486 | -- | -- |
| 264.4 | 0.757 | 3.88 | 0.319 | -- | 1.58 | -- | -1.73 | 0.342 | -- | 24.8 | 1588 | -- | -- |
| 327.42 | 0.848 | 4.05 | -0.711 | 0.236 | -- | 0.0599 | -- | -0.33 | 8.98 | -- | -- | -- | -- |
| 327.43 | 0.847 | 4.05 | -0.709 | 0.236 | -- | -- | -- | -0.329 | 9.04 | -- | -- | -- | -- |
| 267.89 | 0.762 | 3.94 | -0.181 | -- | 1.49 | -- | -- | 0.176 | -- | 24.7 | 1630 | -- | -- |
| 266.11 | 0.76 | 3.92 | -- | 0.256 | 1.51 | -- | -- | 0.215 | 8.02 | 24.72 | 1501 | -- | -- |
| 330.63 | 0.85 | 4.05 | -0.709 | -- | -- | -- | -- | -0.328 | -- | -- | -- | -- | -- |
| 340.68 | 0.863 | 4.03 | -- | 0.235 | -- | -- | -- | -0.251 | 9.26 | -- | -- | -- | -- |
| 268.71 | 0.763 | 3.93 | -- | -- | 1.54 | -- | -- | 0.208 | -- | 24.7 | 1712 | -- | -- |
| 343.91 | 0.866 | 4.03 | -- | -- | -- | -- | -- | -0.249 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 251.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 9 | 255.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 20 | 256.50 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 28 | 257.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 15 |
| 34 | 257.55 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 43 | 257.99 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 62 | 258.57 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 69 | 258.65 | temperature | 25 | 4320 | < th | dose independent | sin | 13 | NA |
| 85 | 258.96 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 86 | 259.00 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 88 | 259.01 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 102 | 259.23 | temperature | 25 | 4320 | > th | dose independent | sin | 13 | NA |
| 107 | 259.27 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 9 |
| 152 | 259.79 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 179 | 260.00 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 187 | 260.07 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 189 | 260.10 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 7 |
| 195 | 260.14 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 3 |
| 202 | 260.20 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 212 | 260.28 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 234 | 260.44 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 246 | 260.52 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 11 |
| 251 | 260.56 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 7 |
| 265 | 260.66 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 269 | 260.70 | temperature | 25 | 4320 | > th | dose dependent | sin | 8 | NA |
| 270 | 260.70 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 9 |
| 326 | 261.02 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 17 |
| 340 | 261.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 347 | 261.13 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 18 |
| 350 | 261.14 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 17 |
| 368 | 261.27 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 13 |
| 393 | 261.42 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 423 | 261.55 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 474 | 261.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 485 | 261.84 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 642 | 262.52 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 646 | 262.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 660 | 262.59 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 678 | 262.65 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 11 |
| 735 | 262.85 | temperature | 25 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 745 | 262.89 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 9 |
| 749 | 262.90 | temperature | 25 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 762 | 262.93 | temperature | 25 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 771 | 262.95 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 21 |
| 794 | 263.00 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 797 | 263.00 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 817 | 263.06 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 11 |
| 820 | 263.07 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 822 | 263.08 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 878 | 263.26 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 881 | 263.27 | temperature | 25 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 946 | 263.42 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 7 |