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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0126800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.0238) R2 : 0.00811
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0967 (0.0501) R2dN8 : 0.0105 R2N8 : 0.00811
σ : 0.448
deviance : 92.06
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
89.02 0.439 2.25 -1.36 0.0816 73.5 -0.406 155 0.0984 5.87 15 90 -- --
91.14 0.448 2.89 -0.0618 0.0825 0.0323 -0.415 -- 0.0865 6.99 14.89 12 -- --
89.42 0.44 2.24 -1.36 0.0795 73.5 -- 155 0.0999 6 15.01 90 -- --
90.39 0.446 2.88 -0.0202 0.0812 -0.505 -- -- 0.1 6.83 16.8 22 -- --
89.75 0.441 2.24 -1.36 -- 73.5 -- 155 0.102 -- 15.02 91 -- --
91.14 0.448 2.89 -0.0604 0.0826 -- -0.416 -- 0.0868 7.02 -- -- -- --
91.59 0.448 2.89 -0.0684 0.0817 -- -- -- 0.0878 6.95 -- -- -- --
90.74 0.446 2.89 -0.0184 -- -0.506 -- -- 0.102 -- 16.8 22 -- --
90.4 0.445 2.88 -- 0.081 -0.516 -- -- 0.103 6.84 16.75 33 -- --
91.94 0.448 2.89 -0.0667 -- -- -- -- 0.0893 -- -- -- -- --
91.71 0.448 2.88 -- 0.0809 -- -- -- 0.0954 7 -- -- -- --
90.75 0.445 2.88 -- -- -0.516 -- -- 0.104 -- 16.8 22 -- --
92.06 0.448 2.89 -- -- -- -- -- 0.0967 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 81.92 wind 9.0 30 < th dose independent rect. 5 23
2 82.09 atmosphere 1005.0 30 > th dose dependent rect. 4 1
3 82.12 temperature 20.0 30 > th dose dependent rect. 4 1
4 82.13 wind 7.0 1440 < th dose independent rect. 5 1
6 82.13 temperature 10.0 1440 > th dose independent rect. 5 1
9 82.13 temperature 30.0 1440 < th dose independent rect. 5 1
13 82.13 humidity 50.0 1440 > th dose independent rect. 5 1
22 82.13 atmosphere 995.0 1440 > th dose independent rect. 5 1
23 82.13 atmosphere 1015.0 1440 < th dose independent rect. 5 1
24 82.13 radiation 20.0 1440 < th dose independent rect. 5 1
33 82.13 temperature 10.0 1440 > th dose independent rect. 6 23
37 82.14 atmosphere 1005.0 30 > th dose independent rect. 4 1
39 82.15 temperature 25.0 10 > th dose independent rect. 4 1
47 82.17 wind 3.0 30 < th dose independent rect. 4 1
51 82.18 wind 1.0 30 > th dose independent rect. 4 1
53 82.18 temperature 10.0 30 > th dose independent rect. 4 1
55 82.18 temperature 30.0 30 < th dose independent rect. 4 1
56 82.18 humidity 50.0 30 > th dose independent rect. 4 1
59 82.18 atmosphere 995.0 30 > th dose independent rect. 4 1
60 82.18 atmosphere 1010.0 30 < th dose independent rect. 4 1
62 82.18 radiation 1.0 30 < th dose independent rect. 4 1
67 82.18 temperature 10.0 30 > th dose independent rect. 5 23
68 82.18 wind 7.0 30 < th dose dependent rect. 4 1
70 82.18 radiation 20.0 30 < th dose dependent rect. 4 1
75 82.19 precipitation 0.1 30 < th dose independent rect. 4 1
77 82.19 radiation 1.0 30 < th dose dependent rect. 4 1
79 82.19 precipitation 0.1 30 < th dose dependent rect. 4 1
80 82.20 humidity 50.0 30 > th dose dependent rect. 4 1
84 82.23 humidity 90.0 10 < th dose independent rect. 4 1
91 82.26 atmosphere 1015.0 30 < th dose dependent rect. 4 1
103 82.36 temperature 30.0 30 < th dose dependent rect. 4 1
106 82.40 temperature 30.0 30 < th dose independent rect. 5 23
117 82.52 atmosphere 995.0 30 > th dose independent rect. 5 23
118 82.53 wind 1.0 30 > th dose dependent rect. 4 1
164 82.89 humidity 90.0 90 < th dose dependent rect. 4 1
167 83.03 precipitation 0.1 30 < th dose independent rect. 5 23
168 83.03 precipitation 0.1 30 < th dose dependent rect. 5 23
177 83.44 humidity 90.0 10 < th dose dependent rect. 4 1
216 85.78 humidity 90.0 10 < th dose independent rect. 2 3
226 86.05 humidity 50.0 30 > th dose independent rect. 5 23
246 86.65 atmosphere 1005.0 270 > th dose dependent rect. 1 1
248 86.67 temperature 10.0 30 > th dose dependent rect. 5 23
268 87.00 atmosphere 1005.0 30 > th dose dependent rect. 1 4
269 87.01 temperature 15.0 720 > th dose independent rect. 5 4
277 87.13 humidity 80.0 4320 < th dose dependent rect. 2 2
282 87.22 temperature 15.0 270 > th dose independent rect. 5 12
292 87.28 atmosphere 1015.0 720 < th dose independent rect. 2 15
296 87.32 atmosphere 1005.0 270 > th dose dependent rect. 1 3
302 87.39 radiation 30.0 30 < th dose independent rect. 11 18
305 87.44 humidity 90.0 720 < th dose independent rect. 4 1
307 87.47 atmosphere 1015.0 30 < th dose independent rect. 5 23
308 87.48 wind 9.0 30 < th dose dependent rect. 5 23
324 87.59 humidity 80.0 30 < th dose dependent rect. 1 3
326 87.60 humidity 80.0 30 < th dose independent rect. 1 1
332 87.60 humidity 80.0 30 < th dose dependent rect. 1 1
341 87.60 radiation 40.0 90 < th dose dependent rect. 10 19
347 87.68 temperature 30.0 10 > th dose dependent rect. 11 1
358 87.72 atmosphere 1015.0 720 < th dose independent rect. 21 20
363 87.74 temperature 15.0 90 > th dose independent rect. 5 14
371 87.77 humidity 80.0 4320 > th dose independent rect. 3 1
372 87.77 humidity 80.0 4320 < th dose independent rect. 4 1
377 87.78 temperature 30.0 10 > th dose independent rect. 11 1
381 87.79 temperature 30.0 90 > th dose independent rect. 11 1
417 87.87 wind 1.0 30 > th dose independent rect. 11 18
432 87.90 temperature 10.0 30 > th dose dependent rect. 5 20
434 87.91 precipitation 0.1 720 < th dose independent rect. 2 15
436 87.91 precipitation 0.1 720 < th dose dependent rect. 2 15
464 87.94 humidity 90.0 720 < th dose independent rect. 24 5
504 87.98 atmosphere 1015.0 720 < th dose independent rect. 21 12
516 87.98 temperature 10.0 30 > th dose dependent rect. 5 14
535 88.04 atmosphere 1005.0 30 > th dose independent rect. 1 4
536 88.04 temperature 15.0 720 > th dose independent rect. 5 9
563 88.09 atmosphere 1015.0 720 < th dose independent rect. 12 21
576 88.11 humidity 80.0 4320 < th dose independent rect. 22 7
608 88.12 precipitation 0.1 720 < th dose independent rect. 5 9
609 88.12 precipitation 0.1 720 < th dose independent rect. 5 12
610 88.12 precipitation 0.1 720 < th dose dependent rect. 5 9
611 88.12 precipitation 0.1 720 < th dose dependent rect. 5 12
613 88.13 temperature 15.0 90 > th dose independent rect. 5 6
622 88.15 radiation 1.0 10 < th dose independent rect. 4 4
630 88.15 temperature 30.0 10 > th dose dependent sin 7 NA
635 88.16 humidity 80.0 4320 > th dose independent rect. 22 7
637 88.16 precipitation 0.1 720 < th dose independent rect. 21 20
641 88.16 precipitation 0.1 720 < th dose dependent rect. 21 20
665 88.18 radiation 40.0 270 < th dose dependent rect. 8 21
669 88.19 atmosphere 1015.0 720 < th dose independent rect. 2 7
675 88.20 precipitation 0.1 720 < th dose independent rect. 5 19
678 88.20 precipitation 0.1 720 < th dose dependent rect. 5 19
686 88.21 radiation 1.0 10 < th dose dependent rect. 4 12
719 88.27 radiation 1.0 720 < th dose dependent rect. 24 11
722 88.28 radiation 1.0 720 < th dose independent rect. 24 11
728 88.28 temperature 10.0 720 > th dose dependent rect. 5 4
747 88.32 radiation 30.0 30 < th dose independent rect. 11 1
753 88.33 wind 9.0 720 < th dose independent rect. 17 12
754 88.33 wind 1.0 30 > th dose independent rect. 5 23
756 88.33 atmosphere 995.0 30 > th dose dependent rect. 11 18
758 88.34 wind 7.0 30 < th dose independent rect. 5 14
762 88.35 radiation 1.0 10 < th dose independent rect. 4 12
778 88.38 wind 1.0 720 > th dose independent rect. 12 5
782 88.38 radiation 30.0 270 < th dose independent rect. 8 21
814 88.41 wind 7.0 720 < th dose independent rect. 24 5
817 88.41 temperature 25.0 720 < th dose independent rect. 22 8
818 88.41 precipitation 0.1 30 < th dose independent rect. 11 18
834 88.41 precipitation 0.1 30 < th dose dependent rect. 11 18
836 88.42 atmosphere 1005.0 270 > th dose independent rect. 1 1
838 88.42 wind 9.0 30 < th dose independent rect. 5 6
841 88.42 humidity 50.0 30 > th dose independent rect. 5 6
842 88.42 atmosphere 995.0 30 > th dose independent rect. 5 6
843 88.42 atmosphere 1015.0 30 < th dose independent rect. 5 6
844 88.42 precipitation 0.1 30 < th dose independent rect. 5 6
846 88.42 temperature 10.0 30 > th dose independent rect. 11 18
851 88.42 precipitation 0.1 30 < th dose dependent rect. 5 6
862 88.43 atmosphere 995.0 1440 > th dose independent rect. 6 6
864 88.43 temperature 10.0 1440 > th dose independent rect. 12 18
876 88.44 temperature 30.0 30 < th dose independent rect. 5 14
878 88.44 atmosphere 995.0 30 > th dose independent rect. 11 18
888 88.45 temperature 30.0 30 < th dose independent rect. 5 6
898 88.46 temperature 10.0 720 > th dose independent rect. 17 12
899 88.46 atmosphere 1015.0 720 < th dose independent rect. 5 12
900 88.46 radiation 30.0 720 < th dose independent rect. 17 12
902 88.46 humidity 50.0 30 > th dose independent rect. 11 18
905 88.47 precipitation 0.1 720 < th dose independent rect. 5 4
908 88.47 temperature 20.0 10 < th dose dependent rect. 12 4
909 88.47 temperature 20.0 90 < th dose dependent rect. 12 4
910 88.47 precipitation 0.1 720 < th dose dependent rect. 5 4
917 88.48 radiation 10.0 720 < th dose independent rect. 24 5
922 88.48 wind 9.0 720 < th dose dependent rect. 1 4
931 88.49 temperature 10.0 720 > th dose independent rect. 24 5
933 88.49 humidity 50.0 720 > th dose independent rect. 24 5
936 88.49 atmosphere 995.0 720 > th dose independent rect. 24 5
941 88.49 precipitation 0.1 720 < th dose independent rect. 12 5
942 88.49 temperature 10.0 720 > th dose independent rect. 5 19
944 88.49 radiation 10.0 720 < th dose dependent rect. 24 5
948 88.49 precipitation 0.1 720 < th dose dependent rect. 12 5
949 88.49 temperature 10.0 30 > th dose dependent rect. 5 6
950 88.50 temperature 10.0 720 > th dose independent rect. 12 5
951 88.50 atmosphere 1015.0 720 < th dose independent rect. 12 5
954 88.50 temperature 10.0 720 > th dose independent rect. 17 19
976 88.51 temperature 20.0 90 < th dose independent rect. 12 4
983 88.51 radiation 1.0 270 < th dose independent rect. 7 22
987 88.51 atmosphere 995.0 30 > th dose dependent rect. 5 6
992 88.52 wind 1.0 30 > th dose independent rect. 5 6
994 88.52 wind 7.0 30 < th dose independent rect. 5 10
995 88.52 atmosphere 995.0 720 > th dose independent rect. 17 12
1000 88.53 wind 1.0 30 > th dose independent rect. 1 4