FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0126500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.97 (0.0591) R2 : 0.808
β1 : 3.33 (0.302) R2dD : 0.132 R2D : -0.0586
β2 : 3.98 (0.163) R2dC : 0.383 R2C : 0.274
β3 : -1.65 (0.221) R2dE : 0.058 R2E : -0.212
β4 : -2.64 (0.592) R2dD*C : 0.00938 R2D*C : -0.0615
β5 : 19.3 (1.61) R2dD*E : 0.196 R2D*E : -0.0313
γ1 : -2.51 (0.138) R2dN8 : 0.285 R2N8 : 0.401
σ : 0.986
deviance : 440.69
__
_____
C
peak time of C : 20.2
E
wheather : temperature
threshold : 30.07
memory length : 714
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 13
open length of G : 1.04

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
440.69 0.986 6.97 3.33 3.98 -1.65 -2.64 19.3 -2.51 20.2 30.07 714 13 1.04
566.75 1.11 7.13 0.853 4.51 -1.71 -1.49 -- -2.94 20.1 18.4 4965 12.3 2.42
460.24 0.999 6.98 3.37 4.03 -1.76 -- 18.9 -2.55 20.2 30.01 699 13 1.04
542.57 1.08 7.25 1.24 4.07 -2.2 -- -- -3.25 20.3 18.22 9193 13.6 3.32
1043.75 1.5 6.93 2.71 -- 0.7 -- 19.2 -2.9 -- 29.9 776 12.5 1.2
579.4 1.13 7.3 0.563 3.56 -- -0.635 -- -3.43 20.2 -- -- -- --
580.64 1.13 7.3 0.581 3.56 -- -- -- -3.43 20.2 -- -- -- --
671.09 1.21 7.57 0.711 -- 2.84 -- -- -3.72 -- 18.46 820 10.8 5.12
563.11 1.11 7.29 -- 4.24 -2.17 -- -- -3.39 20.1 14.7 9154 13.8 3.22
1282.3 1.67 7.21 0.555 -- -- -- -- -3.47 -- -- -- -- --
589.55 1.14 7.31 -- 3.56 -- -- -- -3.5 20.2 -- -- -- --
618.16 1.16 7.21 -- -- 2.93 -- -- -3.51 -- 16.87 834 10.5 5.45
1290.44 1.68 7.22 -- -- -- -- -- -3.53 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 444.29 temperature 30 720 > th dose independent rect. 13 1
2 459.86 atmosphere 1005 10 > th dose dependent rect. 14 9
5 467.84 atmosphere 1005 30 > th dose dependent rect. 16 7
13 474.97 temperature 30 720 > th dose independent rect. 8 6
29 480.72 temperature 20 720 > th dose dependent rect. 1 2
30 480.84 temperature 25 270 < th dose independent rect. 1 9
32 482.70 temperature 25 30 < th dose independent rect. 5 5
35 483.35 temperature 20 720 > th dose dependent rect. 23 4
39 484.69 temperature 30 270 < th dose dependent rect. 1 9
43 486.32 temperature 20 270 > th dose dependent sin 6 NA
45 486.54 temperature 25 720 > th dose dependent rect. 8 7
47 486.77 temperature 25 720 > th dose dependent rect. 7 10
53 487.12 temperature 25 720 > th dose dependent sin 2 NA
57 487.27 temperature 20 270 > th dose dependent rect. 23 12
58 487.28 temperature 20 270 > th dose dependent rect. 23 14
69 488.03 temperature 25 270 < th dose independent rect. 3 7
87 489.09 temperature 25 270 > th dose independent rect. 23 10
114 489.98 temperature 15 720 > th dose dependent rect. 8 11
129 490.72 temperature 20 720 > th dose dependent rect. 23 8
165 492.04 temperature 25 270 > th dose independent rect. 23 12
184 493.01 temperature 20 270 > th dose dependent rect. 23 10
243 495.45 temperature 25 270 < th dose independent sin 6 NA
249 495.67 temperature 25 720 > th dose dependent rect. 13 1
262 496.03 atmosphere 1005 270 > th dose dependent rect. 14 5
306 497.98 temperature 30 720 > th dose independent sin 6 NA
337 498.92 temperature 15 720 > th dose dependent sin 22 NA
365 499.76 temperature 25 720 > th dose dependent rect. 16 23
377 500.00 temperature 25 10 > th dose independent rect. 16 12
390 500.37 temperature 25 10 > th dose independent rect. 16 9
427 501.23 atmosphere 1005 30 > th dose dependent rect. 18 5
432 501.33 temperature 25 90 > th dose dependent sin 13 NA
451 501.71 temperature 30 270 < th dose dependent sin 5 NA
490 502.48 temperature 25 720 > th dose dependent no NA NA
525 503.24 temperature 30 30 < th dose independent rect. 5 18
535 503.42 temperature 15 14400 > th dose independent rect. 12 13
547 503.68 temperature 15 14400 < th dose independent rect. 20 2
557 503.88 temperature 15 14400 > th dose independent rect. 14 11
570 504.11 temperature 15 14400 > th dose independent sin 18 NA
585 504.66 temperature 25 30 > th dose independent rect. 16 7
592 504.81 temperature 25 270 > th dose dependent sin 15 NA
596 504.88 temperature 15 14400 < th dose independent sin 17 NA
599 504.92 temperature 25 720 > th dose dependent rect. 13 23
601 504.94 temperature 15 14400 > th dose independent sin 22 NA
605 504.95 temperature 30 720 < th dose dependent rect. 9 10
615 505.07 temperature 30 720 < th dose dependent rect. 7 14
617 505.09 temperature 30 270 < th dose dependent rect. 1 21
618 505.15 temperature 15 14400 < th dose independent rect. 12 14
621 505.17 temperature 30 270 < th dose dependent rect. 10 13
629 505.32 temperature 15 14400 < th dose independent rect. 18 6
636 505.40 temperature 15 14400 > th dose independent rect. 18 6
637 505.42 temperature 15 14400 < th dose independent rect. 15 10
646 505.48 atmosphere 1005 270 > th dose dependent rect. 18 1
652 505.56 temperature 30 720 < th dose dependent rect. 10 8
656 505.63 temperature 15 14400 > th dose independent rect. 7 18
657 505.64 temperature 25 30 > th dose dependent rect. 18 10
687 505.95 temperature 30 270 < th dose dependent sin 19 NA
696 506.02 temperature 15 14400 > th dose independent rect. 9 16
711 506.17 temperature 15 14400 > th dose independent rect. 6 15
721 506.25 temperature 15 14400 < th dose independent rect. 4 19
727 506.35 temperature 25 720 > th dose dependent rect. 11 23
743 506.54 temperature 15 14400 > th dose independent rect. 20 2
751 506.65 temperature 30 30 < th dose dependent sin 17 NA
758 506.72 temperature 10 270 > th dose dependent rect. 6 22
769 506.87 temperature 30 30 < th dose independent rect. 7 16
807 507.41 temperature 15 14400 < th dose independent sin 0 NA
828 507.58 temperature 15 14400 < th dose independent rect. 7 20
839 507.69 temperature 15 14400 < th dose independent rect. 5 16
856 507.83 temperature 30 720 < th dose dependent sin 22 NA
862 507.89 temperature 15 14400 > th dose independent rect. 9 12
884 508.09 temperature 10 90 > th dose dependent sin 16 NA
909 508.42 temperature 15 30 > th dose dependent rect. 23 21
921 508.56 temperature 10 270 > th dose dependent sin 18 NA
929 508.63 temperature 30 30 < th dose independent rect. 7 23
962 508.99 temperature 25 10 > th dose dependent rect. 16 12
985 509.29 atmosphere 1005 270 > th dose independent rect. 13 8