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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0122000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.93 (0.0402) R2 : 0.797
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.86 (0.115) R2dE : 0.314 R2E : -0.29
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -3.63 (0.089) R2dN8 : 1.09 R2N8 : 0.484
σ : 0.744
deviance : 255.32
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 19.39
memory length : 47520
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
237.96 0.725 5.72 2.82 0.383 1.54 -0.261 1 -2.79 21.4 20 3657 -- --
239.59 0.721 5.76 2.7 0.379 1.36 -0.274 -- -2.79 21.4 20.1 3647 -- --
238.19 0.719 5.72 2.82 0.386 1.54 -- 0.969 -2.8 21.2 20.01 3666 -- --
239.47 0.721 5.76 2.67 0.392 1.36 -- -- -2.83 21.2 20.07 3656 -- --
246.81 0.732 5.71 2.82 -- 1.58 -- 1.03 -2.79 -- 20.1 3666 -- --
272.67 0.774 5.68 3.46 0.437 -- -0.209 -- -2.47 21.7 -- -- -- --
272.83 0.773 5.68 3.47 0.439 -- -- -- -2.47 21.6 -- -- -- --
248.38 0.734 5.76 2.64 -- 1.42 -- -- -2.85 -- 20.1 3657 -- --
245.74 0.73 5.94 -- 0.432 2.85 -- -- -3.61 21.3 19.4 47520 -- --
284.22 0.788 5.67 3.47 -- -- -- -- -2.47 -- -- -- -- --
590.05 1.14 5.77 -- 0.45 -- -- -- -2.86 22.1 -- -- -- --
255.32 0.744 5.93 -- -- 2.86 -- -- -3.63 -- 19.39 47520 -- --
602.32 1.15 5.75 -- -- -- -- -- -2.86 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 216.75 wind 1.0 43200 < th dose dependent rect. 8 1
2 218.21 wind 1.0 43200 < th dose dependent rect. 23 10
3 218.42 wind 1.0 43200 < th dose dependent sin 8 NA
4 218.51 wind 1.0 43200 < th dose dependent rect. 22 12
14 219.01 wind 1.0 43200 < th dose dependent rect. 23 8
50 221.48 wind 1.0 14400 < th dose independent rect. 24 3
54 221.61 wind 1.0 43200 > th dose independent rect. 21 12
69 222.83 wind 1.0 43200 < th dose independent rect. 21 10
79 223.13 wind 1.0 43200 < th dose independent rect. 8 1
80 223.13 wind 1.0 14400 > th dose independent rect. 24 3
82 223.16 wind 1.0 43200 < th dose independent rect. 19 14
83 223.18 wind 1.0 43200 < th dose independent rect. 21 12
92 223.56 wind 1.0 43200 < th dose dependent rect. 4 5
131 224.28 wind 1.0 43200 < th dose independent sin 9 NA
141 224.46 wind 1.0 43200 > th dose independent sin 9 NA
148 224.74 wind 1.0 14400 < th dose dependent rect. 1 3
155 224.97 wind 1.0 43200 > th dose independent rect. 8 1
195 225.84 wind 1.0 43200 < th dose dependent rect. 4 7
233 226.67 wind 1.0 43200 < th dose dependent rect. 3 9
307 228.02 atmosphere 995.0 43200 < th dose dependent rect. 12 18
338 228.55 atmosphere 995.0 43200 > th dose independent rect. 18 17
344 228.65 atmosphere 995.0 43200 > th dose independent sin 8 NA
360 228.98 wind 1.0 43200 < th dose dependent rect. 22 21
364 229.05 atmosphere 995.0 43200 < th dose independent rect. 18 17
374 229.15 wind 1.0 43200 < th dose dependent rect. 22 23
380 229.28 wind 1.0 43200 < th dose dependent rect. 8 23
381 229.28 wind 1.0 43200 < th dose dependent rect. 20 23
385 229.33 atmosphere 995.0 43200 < th dose independent sin 8 NA
403 229.67 atmosphere 995.0 43200 < th dose dependent sin 11 NA
415 229.76 atmosphere 995.0 43200 < th dose dependent sin 15 NA
424 229.98 wind 1.0 43200 < th dose dependent no NA NA
429 230.05 atmosphere 995.0 43200 < th dose dependent rect. 16 17
449 230.38 wind 1.0 43200 < th dose dependent rect. 1 23
450 230.39 atmosphere 995.0 43200 > th dose independent rect. 21 14
493 230.84 atmosphere 995.0 43200 < th dose independent rect. 21 14
498 230.88 atmosphere 995.0 43200 < th dose independent rect. 22 12
500 230.89 atmosphere 995.0 43200 > th dose independent rect. 22 12
510 230.93 wind 3.0 43200 < th dose dependent rect. 22 1
515 231.00 wind 1.0 43200 > th dose independent rect. 5 4
534 231.20 atmosphere 995.0 43200 > th dose independent rect. 4 4
538 231.23 humidity 70.0 43200 < th dose independent rect. 2 6
546 231.33 atmosphere 995.0 43200 < th dose independent rect. 1 8
547 231.33 atmosphere 995.0 43200 < th dose dependent rect. 3 5
557 231.42 humidity 70.0 43200 > th dose independent rect. 2 6
559 231.45 atmosphere 995.0 43200 > th dose independent rect. 1 8
570 231.52 precipitation 0.1 43200 > th dose independent rect. 8 5
572 231.52 precipitation 0.1 43200 > th dose dependent rect. 8 5
589 231.64 wind 1.0 43200 < th dose dependent rect. 5 23
592 231.66 atmosphere 995.0 43200 < th dose independent rect. 4 4
612 231.83 precipitation 0.1 43200 < th dose independent rect. 8 4
613 231.83 precipitation 0.1 43200 < th dose dependent rect. 8 4
615 231.84 atmosphere 995.0 43200 < th dose dependent rect. 21 12
619 231.85 wind 1.0 43200 < th dose dependent rect. 12 2
654 232.16 humidity 90.0 14400 > th dose dependent rect. 11 2
686 232.49 humidity 70.0 43200 < th dose dependent rect. 7 1
694 232.55 humidity 70.0 43200 < th dose independent rect. 7 1
726 232.80 humidity 60.0 43200 < th dose independent rect. 23 11
735 232.86 temperature 25.0 720 < th dose dependent rect. 3 8
743 232.92 humidity 70.0 43200 < th dose dependent rect. 2 7
746 232.93 temperature 25.0 720 < th dose dependent rect. 1 10
808 233.29 temperature 25.0 720 < th dose dependent sin 5 NA
843 233.45 atmosphere 1010.0 43200 > th dose dependent rect. 3 2
850 233.50 humidity 70.0 43200 > th dose independent rect. 7 1
857 233.55 precipitation 0.1 43200 > th dose independent rect. 8 1
858 233.55 precipitation 0.1 43200 > th dose dependent rect. 8 1
879 233.63 humidity 90.0 14400 < th dose independent rect. 12 1