FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0121900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0214) R2 : 0.00794
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0862 (0.0451) R2dN8 : 0.0103 R2N8 : 0.00794
σ : 0.404
deviance : 74.85
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
67.51 0.386 3.02 -0.502 0.00659 1.06 -0.377 -5.65 -0.058 6.09 30.3 202 -- --
69.05 0.387 2.96 -0.0733 0.00244 0.439 0.228 -- -0.0511 17.7 30.37 196 -- --
67.81 0.384 3.02 -0.526 0.00256 1.13 -- -6.05 -0.0507 17.7 30.4 202 -- --
69.01 0.387 2.97 -0.0571 0.0276 0.445 -- -- -0.0492 16.9 30.5 127 -- --
67.81 0.384 3.02 -0.522 -- 1.12 -- -6 -0.0503 -- 30.41 202 -- --
73.02 0.401 2.98 -0.0174 0.151 -- 0.457 -- -0.0869 16.6 -- -- -- --
73.5 0.401 2.97 -0.0141 0.156 -- -- -- -0.0844 15.7 -- -- -- --
69.03 0.387 2.97 -0.0715 -- 0.465 -- -- -0.0496 -- 30.46 119 -- --
69.09 0.387 2.96 -- 0.0326 0.438 -- -- -0.0456 16.4 30.5 119 -- --
74.84 0.404 2.97 -0.0205 -- -- -- -- -0.0885 -- -- -- -- --
73.51 0.401 2.97 -- 0.156 -- -- -- -0.0828 15.7 -- -- -- --
69.16 0.387 2.96 -- -- 0.458 -- -- -0.0425 -- 30.48 114 -- --
74.85 0.404 2.97 -- -- -- -- -- -0.0862 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 62.27 wind 5.0 10 > th dose independent rect. 10 1
5 62.27 wind 5.0 10 > th dose dependent rect. 10 1
28 62.64 humidity 90.0 90 > th dose independent rect. 8 1
33 62.88 humidity 90.0 90 > th dose dependent rect. 8 1
37 63.12 wind 9.0 90 > th dose dependent rect. 19 15
38 63.13 wind 9.0 90 > th dose dependent rect. 21 13
63 64.09 humidity 60.0 90 < th dose dependent rect. 17 16
77 65.05 humidity 60.0 90 < th dose independent rect. 17 16
138 66.58 temperature 30.0 30 < th dose independent rect. 3 23
139 66.66 temperature 30.0 270 < th dose independent rect. 10 12
147 66.88 humidity 60.0 30 > th dose independent sin 10 NA
153 67.03 temperature 30.0 720 < th dose independent rect. 3 10
155 67.06 humidity 60.0 30 < th dose independent sin 10 NA
166 67.24 humidity 70.0 90 < th dose dependent sin 11 NA
167 67.27 radiation 20.0 30 > th dose independent rect. 9 1
179 67.42 temperature 30.0 90 < th dose independent rect. 10 23
181 67.46 humidity 70.0 720 < th dose dependent rect. 8 2
187 67.50 wind 9.0 90 > th dose independent rect. 19 15
193 67.53 temperature 20.0 30 > th dose independent rect. 2 1
199 67.58 temperature 20.0 30 > th dose dependent rect. 2 1
216 67.63 humidity 70.0 720 < th dose independent rect. 7 3
218 67.64 humidity 90.0 30 > th dose independent rect. 2 1
220 67.66 temperature 30.0 90 > th dose dependent rect. 17 22
238 67.70 atmosphere 1005.0 30 > th dose dependent rect. 2 1
259 67.76 wind 3.0 30 < th dose dependent rect. 2 1
261 67.77 temperature 30.0 270 > th dose independent rect. 14 23
264 67.78 humidity 80.0 30 > th dose dependent rect. 2 1
282 67.85 wind 1.0 30 < th dose independent rect. 2 1
285 67.85 temperature 30.0 720 < th dose independent rect. 1 14
295 67.88 atmosphere 1000.0 30 > th dose independent rect. 2 1
296 67.88 temperature 30.0 270 < th dose independent rect. 8 23
303 67.89 temperature 10.0 30 > th dose independent rect. 2 1
305 67.89 temperature 30.0 30 < th dose independent rect. 2 1
306 67.89 humidity 50.0 30 > th dose independent rect. 2 1
310 67.89 atmosphere 1010.0 30 < th dose independent rect. 2 1
312 67.89 radiation 1.0 30 < th dose independent rect. 2 1
317 67.89 precipitation 0.1 30 < th dose independent rect. 2 1
318 67.89 temperature 10.0 30 > th dose independent rect. 3 23
319 67.89 radiation 1.0 30 < th dose dependent rect. 2 1
324 67.89 precipitation 0.1 30 < th dose dependent rect. 2 1
325 67.90 temperature 30.0 270 > th dose independent rect. 8 10
356 67.96 temperature 30.0 270 < th dose independent rect. 1 23
365 68.01 temperature 30.0 270 > th dose independent no NA NA
366 68.01 temperature 30.0 30 < th dose independent sin 11 NA
460 68.02 atmosphere 1015.0 30 < th dose dependent rect. 2 1
473 68.06 temperature 30.0 30 > th dose independent sin 11 NA
474 68.06 temperature 30.0 270 > th dose independent rect. 17 23
483 68.11 temperature 30.0 720 < th dose independent rect. 3 12
509 68.14 temperature 30.0 270 > th dose independent sin 23 NA
510 68.14 temperature 30.0 270 < th dose independent sin 22 NA
511 68.14 temperature 30.0 270 < th dose independent no NA NA
516 68.15 wind 1.0 10 < th dose dependent rect. 9 4
522 68.16 temperature 30.0 30 > th dose independent rect. 13 21
530 68.19 wind 1.0 10 < th dose independent rect. 9 4
535 68.21 wind 1.0 10 < th dose independent rect. 9 9
549 68.22 temperature 30.0 270 < th dose independent rect. 16 23
578 68.28 humidity 60.0 90 < th dose dependent rect. 17 1
586 68.28 temperature 10.0 270 > th dose dependent rect. 6 12
590 68.29 temperature 30.0 90 > th dose dependent rect. 12 23
616 68.33 temperature 30.0 90 > th dose independent rect. 17 1
655 68.34 temperature 20.0 270 > th dose dependent rect. 22 21
657 68.35 temperature 30.0 720 < th dose independent rect. 18 21
658 68.35 temperature 30.0 30 < th dose dependent rect. 2 1
662 68.36 temperature 30.0 720 < th dose independent rect. 19 18
667 68.37 humidity 60.0 1440 > th dose independent rect. 20 13
668 68.37 humidity 60.0 4320 < th dose dependent rect. 8 2
681 68.37 temperature 30.0 270 > th dose dependent rect. 14 23
685 68.38 temperature 30.0 270 > th dose dependent sin 1 NA
700 68.40 temperature 30.0 270 > th dose dependent rect. 8 10
712 68.40 radiation 40.0 30 > th dose dependent rect. 14 21
716 68.41 temperature 30.0 30 > th dose independent sin 15 NA
721 68.42 temperature 30.0 270 > th dose dependent no NA NA
723 68.42 radiation 40.0 30 > th dose dependent rect. 9 2
836 68.43 wind 1.0 30 > th dose independent rect. 2 1
837 68.43 humidity 60.0 4320 < th dose independent rect. 8 1
878 68.45 humidity 60.0 90 < th dose independent rect. 12 22
879 68.45 temperature 30.0 30 < th dose dependent rect. 3 23