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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0121800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.46 (0.0623) R2 : 0.785
β1 : -0.965 (0.238) R2dD : 0.00893 R2D : -0.14
β2 : 2.75 (0.152) R2dC : 0.158 R2C : -0.0324
β3 : -2.73 (0.167) R2dE : 0.142 R2E : 0.0334
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -4.15 (0.134) R2dN8 : 0.619 R2N8 : 0.496
σ : 1.16
deviance : 621.8
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_____
C
peak time of C : 2.06
E
wheather : temperature
threshold : 25
memory length : 1395
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 13.2
open length of G : 0.566

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
610.27 1.16 7.51 -1.26 2.75 -2.61 1.72 -1.21 -4.24 2.02 25.18 1396 13.2 0.583
611.43 1.15 7.47 -0.922 2.75 -2.69 1.67 -- -4.14 2 25.08 1392 13.2 0.6
621.27 1.16 7.5 -1.19 2.76 -2.65 -- -0.754 -4.22 2.06 25.08 1385 13.2 0.55
621.8 1.16 7.46 -0.965 2.75 -2.73 -- -- -4.15 2.06 25 1395 13.2 0.566
961.09 1.44 7.5 -1.21 -- -3.67 -- 0.259 -4.13 -- 23.39 1819 13.4 0.2
979.16 1.47 7.54 -2.09 2.44 -- 1.41 -- -4.49 2.06 -- -- -- --
986.66 1.47 7.55 -2.13 2.45 -- -- -- -4.5 2.11 -- -- -- --
952.75 1.44 7.47 -0.98 -- -4.02 -- -- -4.03 -- 23 1818 13.4 0.133
644.86 1.18 7.47 -- 2.8 -2.88 -- -- -4.06 2.04 25 1385 13.2 0.617
1345.37 1.71 7.52 -2.03 -- -- -- -- -4.44 -- -- -- -- --
1105.93 1.56 7.49 -- 2.41 -- -- -- -4.26 2.09 -- -- -- --
965 1.45 7.39 -- -- -4.2 -- -- -3.84 -- 23 1814 13.5 0.0158
1453.54 1.78 7.47 -- -- -- -- -- -4.22 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 631.84 temperature 25 1440 > th dose dependent rect. 13 1
2 634.20 temperature 25 1440 > th dose dependent rect. 13 4
6 638.65 temperature 25 1440 > th dose dependent rect. 15 2
26 643.40 temperature 25 1440 > th dose dependent rect. 13 10
29 643.54 temperature 25 1440 > th dose dependent rect. 13 12
37 644.73 temperature 25 1440 > th dose dependent rect. 11 14
38 644.83 temperature 25 1440 > th dose dependent rect. 11 12
65 646.06 temperature 25 1440 > th dose dependent sin 19 NA
104 648.26 temperature 25 1440 > th dose dependent rect. 21 21
232 651.46 temperature 25 1440 > th dose dependent rect. 24 23
233 651.47 temperature 25 1440 > th dose dependent no NA NA
291 654.55 temperature 25 1440 > th dose dependent rect. 15 23
441 661.84 temperature 25 720 > th dose dependent rect. 19 15
446 662.32 temperature 25 720 > th dose dependent sin 10 NA
523 665.91 temperature 25 720 > th dose dependent rect. 17 17
608 669.17 radiation 40 1440 > th dose dependent rect. 13 2
833 672.85 temperature 10 1440 > th dose dependent sin 22 NA