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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0120100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.87 (0.0297) R2 : 0.441
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.19 (0.0626) R2dN8 : 0.569 R2N8 : 0.441
σ : 0.56
deviance : 143.97
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
128.21 0.532 2.83 0.277 0.421 -0.831 -0.839 5.23 1.18 6.07 0.6 98 -- --
133.21 0.542 2.86 0.174 0.442 -0.424 -0.507 -- 1.18 5.91 1.316 233 -- --
129.76 0.531 2.83 0.275 0.42 -0.895 -- 5.13 1.18 6.06 0.4989 97 -- --
133.82 0.542 2.86 0.172 0.442 -0.445 -- -- 1.18 5.77 1.316 233 -- --
137.79 0.547 2.84 0.245 -- -0.439 -- 4.52 1.2 -- 0.4987 97 -- --
135.3 0.545 2.86 0.141 0.378 -- -0.572 -- 1.19 6.22 -- -- -- --
136.11 0.546 2.86 0.135 0.375 -- -- -- 1.19 6.15 -- -- -- --
138.56 0.548 2.87 0.0318 -- 0.377 -- -- 1.21 -- 4.8 243 -- --
134.59 0.543 2.87 -- 0.44 -0.412 -- -- 1.16 5.78 1.316 233 -- --
143.41 0.56 2.87 0.145 -- -- -- -- 1.2 -- -- -- -- --
136.58 0.547 2.86 -- 0.377 -- -- -- 1.18 6.14 -- -- -- --
138.13 0.547 2.87 -- -- 0.385 -- -- 1.21 -- 4.7 111 -- --
143.97 0.56 2.87 -- -- -- -- -- 1.19 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 115.68 temperature 25.0 30 > th dose independent rect. 24 9
5 116.79 temperature 25.0 90 > th dose independent rect. 3 5
19 119.20 wind 1.0 90 < th dose dependent rect. 4 1
30 120.23 wind 1.0 90 < th dose independent rect. 4 1
42 121.50 atmosphere 1005.0 270 > th dose dependent rect. 2 4
47 121.90 temperature 25.0 90 > th dose dependent rect. 24 8
53 122.15 temperature 25.0 270 > th dose independent rect. 6 1
62 122.44 temperature 20.0 270 > th dose dependent rect. 4 1
69 122.81 temperature 25.0 10 > th dose dependent rect. 24 7
77 122.99 atmosphere 1005.0 30 > th dose dependent rect. 4 3
80 123.03 temperature 25.0 1440 < th dose independent rect. 3 3
81 123.04 temperature 25.0 720 > th dose independent rect. 21 10
85 123.08 temperature 20.0 270 > th dose dependent rect. 3 4
90 123.18 temperature 20.0 30 > th dose dependent rect. 4 5
99 123.30 temperature 25.0 10 > th dose dependent rect. 24 9
161 124.27 temperature 25.0 720 < th dose independent rect. 22 8
180 124.46 temperature 25.0 30 > th dose independent sin 8 NA
238 125.09 temperature 25.0 30 < th dose independent sin 8 NA
257 125.33 temperature 25.0 270 > th dose dependent rect. 6 1
266 125.42 temperature 25.0 10 > th dose dependent rect. 4 3
270 125.47 humidity 90.0 10 < th dose independent rect. 24 9
272 125.50 radiation 10.0 30 < th dose independent rect. 6 2
275 125.52 temperature 25.0 720 > th dose dependent rect. 21 10
277 125.53 atmosphere 1005.0 30 > th dose dependent rect. 24 7
306 125.81 temperature 25.0 720 > th dose independent rect. 21 5
352 126.21 temperature 25.0 90 < th dose independent rect. 23 10
354 126.21 wind 1.0 90 < th dose dependent rect. 4 8
376 126.33 wind 1.0 90 < th dose dependent rect. 1 5
384 126.36 radiation 10.0 30 < th dose dependent rect. 6 1
421 126.59 temperature 25.0 10 > th dose dependent rect. 6 1
429 126.62 temperature 25.0 720 > th dose dependent rect. 21 1
459 126.79 temperature 25.0 720 > th dose dependent rect. 21 4
463 126.83 atmosphere 1010.0 30 < th dose independent rect. 6 1
472 126.87 wind 1.0 90 < th dose dependent rect. 4 17
473 126.88 humidity 90.0 10 < th dose independent rect. 4 5
498 127.02 wind 1.0 90 < th dose dependent rect. 1 11
523 127.14 wind 1.0 90 < th dose dependent rect. 4 14
553 127.24 temperature 25.0 90 < th dose independent rect. 23 12
566 127.34 temperature 25.0 10 < th dose independent rect. 24 10
567 127.34 wind 1.0 30 > th dose dependent rect. 6 1
583 127.39 wind 1.0 90 < th dose dependent rect. 1 20
596 127.45 temperature 30.0 10 < th dose dependent rect. 6 1
607 127.50 temperature 25.0 90 < th dose independent rect. 1 8
612 127.51 temperature 25.0 10 < th dose independent rect. 24 8
627 127.58 humidity 90.0 30 < th dose dependent rect. 6 1
636 127.62 wind 1.0 90 < th dose dependent rect. 1 17
643 127.64 temperature 25.0 10 < th dose independent rect. 2 6
647 127.66 wind 3.0 30 > th dose independent rect. 6 1
649 127.67 temperature 25.0 720 > th dose independent rect. 24 1
663 127.70 wind 1.0 30 > th dose independent rect. 4 3
664 127.71 temperature 25.0 720 > th dose dependent rect. 24 1
671 127.72 wind 1.0 90 < th dose dependent sin 4 NA
673 127.73 temperature 25.0 10 < th dose independent rect. 2 8
686 127.79 humidity 90.0 10 < th dose independent rect. 2 7
707 127.85 humidity 90.0 10 < th dose independent rect. 24 7
710 127.86 humidity 90.0 90 < th dose independent rect. 4 3
750 127.93 atmosphere 1005.0 720 > th dose dependent rect. 24 1
752 127.94 wind 1.0 30 < th dose independent rect. 6 1
755 127.94 wind 9.0 10 < th dose independent rect. 7 23
774 127.98 atmosphere 1015.0 30 < th dose dependent rect. 6 1
779 128.00 radiation 20.0 10 < th dose independent rect. 6 10
789 128.02 radiation 1.0 10 > th dose dependent rect. 6 1
808 128.07 humidity 90.0 30 < th dose independent rect. 6 3
813 128.08 atmosphere 1005.0 10 > th dose independent rect. 6 1
831 128.13 temperature 10.0 720 > th dose dependent rect. 7 6
839 128.15 temperature 25.0 720 > th dose dependent rect. 9 3
841 128.15 temperature 25.0 720 > th dose dependent rect. 8 5
848 128.17 radiation 20.0 10 < th dose independent rect. 6 20
859 128.20 humidity 70.0 10 > th dose dependent rect. 6 1
879 128.27 humidity 90.0 10 > th dose independent rect. 24 8
895 128.31 temperature 15.0 1440 > th dose independent rect. 6 2
902 128.32 wind 9.0 30 < th dose independent rect. 13 23
915 128.37 temperature 20.0 10 < th dose independent rect. 4 2
922 128.37 temperature 10.0 30 > th dose dependent rect. 9 21
923 128.38 temperature 20.0 90 < th dose independent rect. 4 1
939 128.41 radiation 1.0 10 > th dose independent rect. 6 1
942 128.43 humidity 90.0 10 < th dose independent rect. 4 3
949 128.45 wind 5.0 10 < th dose independent rect. 6 1
952 128.45 temperature 10.0 10 > th dose independent rect. 6 1
954 128.45 temperature 30.0 10 < th dose independent rect. 6 1
955 128.45 humidity 50.0 10 > th dose independent rect. 6 1
963 128.45 precipitation 0.1 10 < th dose independent rect. 6 1
964 128.45 temperature 10.0 10 > th dose independent rect. 7 23
967 128.45 precipitation 0.1 10 < th dose dependent rect. 6 1