Os04g0119800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0119800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.73 | 0.488 | 9.1 | 1.1 | 1.26 | -1.86 | -0.365 | -5.3 | -1.56 | 7.49 | 0.9564 | 4301 | -- | -- |
| 121.6 | 0.514 | 9.24 | 0.364 | 1.23 | -0.923 | -0.349 | -- | -1.75 | 7.18 | 5.155 | 7213 | -- | -- |
| 107.99 | 0.484 | 9.1 | 1.1 | 1.28 | -1.91 | -- | -5.47 | -1.56 | 7.57 | 0.8689 | 4288 | -- | -- |
| 120.83 | 0.512 | 9.23 | 0.433 | 1.27 | -1.09 | -- | -- | -1.74 | 7.25 | 14.48 | 2862 | -- | -- |
| 185.55 | 0.634 | 9.13 | 1.1 | -- | -1.92 | -- | -5.46 | -1.55 | -- | 1.218 | 7240 | -- | -- |
| 148.02 | 0.57 | 9.18 | 0.419 | 1.25 | -- | -0.429 | -- | -1.53 | 7.21 | -- | -- | -- | -- |
| 148.5 | 0.571 | 9.18 | 0.41 | 1.25 | -- | -- | -- | -1.53 | 7.17 | -- | -- | -- | -- |
| 188.86 | 0.64 | 9.29 | 0.201 | -- | -1.69 | -- | -- | -1.8 | -- | 3.638 | 2928 | -- | -- |
| 125.02 | 0.521 | 9.23 | -- | 1.3 | -1.01 | -- | -- | -1.76 | 7.51 | 24.09 | 2818 | -- | -- |
| 231.28 | 0.711 | 9.21 | 0.433 | -- | -- | -- | -- | -1.5 | -- | -- | -- | -- | -- |
| 152.93 | 0.578 | 9.19 | -- | 1.26 | -- | -- | -- | -1.57 | 7.15 | -- | -- | -- | -- |
| 189.35 | 0.641 | 9.29 | -- | -- | -1.82 | -- | -- | -1.89 | -- | 3.486 | 2928 | -- | -- |
| 236.23 | 0.717 | 9.22 | -- | -- | -- | -- | -- | -1.55 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 99.08 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 2 | 99.09 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 4 | 99.26 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 6 | 99.30 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 7 | 99.51 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 9 | 99.53 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 11 | 99.54 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 18 | 99.73 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 24 | 99.89 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 27 | 99.93 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 38 | 99.99 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 53 | 102.37 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 16 |
| 81 | 102.86 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 84 | 102.89 | radiation | 1 | 14400 | < th | dose dependent | sin | 14 | NA |
| 159 | 103.33 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 10 |
| 193 | 103.39 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 218 | 103.44 | radiation | 10 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 231 | 103.47 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 256 | 103.62 | radiation | 30 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 299 | 103.74 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 15 |
| 301 | 103.74 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 17 |
| 303 | 103.74 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 19 |
| 306 | 103.74 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 21 |
| 339 | 103.79 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 347 | 103.79 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 21 |
| 351 | 103.80 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 386 | 103.90 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 393 | 103.91 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 407 | 104.03 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 421 | 104.09 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 426 | 104.12 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 6 |
| 436 | 104.19 | humidity | 90 | 43200 | > th | dose dependent | sin | 16 | NA |
| 439 | 104.20 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 3 |
| 449 | 104.23 | temperature | 20 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 451 | 104.24 | temperature | 20 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 452 | 104.24 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 464 | 104.29 | temperature | 20 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 471 | 104.31 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 499 | 104.37 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 19 |
| 502 | 104.38 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 17 |
| 583 | 104.55 | temperature | 25 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 589 | 104.56 | temperature | 25 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 608 | 104.62 | temperature | 20 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 635 | 104.68 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 19 |
| 659 | 104.72 | temperature | 20 | 43200 | < th | dose independent | rect. | 20 | 19 |
| 662 | 104.73 | temperature | 20 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 677 | 104.74 | temperature | 20 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 697 | 104.76 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 21 |
| 712 | 104.79 | temperature | 20 | 43200 | < th | dose independent | sin | 10 | NA |
| 731 | 104.80 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 21 |
| 735 | 104.81 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 738 | 104.81 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 778 | 104.84 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 19 |
| 784 | 104.84 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 22 |
| 800 | 104.85 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 8 |
| 803 | 104.85 | temperature | 20 | 43200 | < th | dose independent | rect. | 14 | 12 |
| 805 | 104.85 | temperature | 20 | 43200 | < th | dose independent | rect. | 11 | 15 |
| 816 | 104.85 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 818 | 104.86 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 828 | 104.87 | temperature | 20 | 43200 | > th | dose independent | sin | 12 | NA |
| 829 | 104.87 | radiation | 1 | 14400 | < th | dose independent | sin | 13 | NA |
| 857 | 104.88 | temperature | 20 | 43200 | < th | dose independent | rect. | 14 | 18 |
| 916 | 104.91 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 22 |
| 925 | 104.92 | temperature | 20 | 43200 | > th | dose independent | rect. | 13 | 13 |
| 927 | 104.92 | temperature | 20 | 43200 | > th | dose independent | rect. | 11 | 15 |
| 959 | 104.94 | radiation | 1 | 14400 | > th | dose independent | sin | 13 | NA |
| 994 | 104.95 | temperature | 20 | 43200 | > th | dose independent | rect. | 14 | 18 |