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Os04g0119000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.0568) R2 : 0.909
β1 : -1.23 (0.207) R2dD : 0.00726 R2D : -0.00784
β2 : 9.23 (0.143) R2dC : 0.837 R2C : 0.79
β3 : 3.04 (0.131) R2dE : 0.109 R2E : 0.0556
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.527 (0.121) R2dN8 : 0.00493 R2N8 : -0.00125
σ : 1.06
deviance : 517.66
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C
peak time of C : 20.5
E
wheather : radiation
threshold : 6.87
memory length : 13
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 23.9
open length of G : 17.9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
519 1.07 11 -1.24 9.3 2.97 0.438 -0.61 -0.566 20.5 7.036 14 23.9 17.1
517.56 1.06 11 -1.22 9.25 3.03 0.411 -- -0.54 20.5 6.82 13 23.9 17.1
518.45 1.06 11 -1.26 9.26 2.98 -- -0.533 -0.552 20.5 6.842 14 23.9 17.3
517.66 1.06 11 -1.23 9.23 3.04 -- -- -0.527 20.5 6.87 13 23.9 17.9
3250.2 2.67 10.7 -1.2 -- 4.75 -- 0.348 -0.381 -- 3.56 9 22.9 21.2
799.54 1.33 11 -1.24 9.08 -- -0.184 -- -0.661 21.5 -- -- -- --
799.67 1.32 11 -1.24 9.09 -- -- -- -0.661 21.5 -- -- -- --
2114.78 2.14 10.8 -1.28 -- 5.94 -- -- -0.527 -- 6.657 2 22.2 24
557.83 1.1 11 -- 9.25 3.02 -- -- -0.393 20.5 6.717 13 23.9 17.7
5651.29 3.51 10.8 -1.18 -- -- -- -- -0.689 -- -- -- -- --
839.97 1.36 11 -- 9.08 -- -- -- -0.523 21.5 -- -- -- --
2157.93 2.16 10.7 -- -- 5.92 -- -- -0.378 -- 6.531 2 23.4 24
5687.87 3.52 10.8 -- -- -- -- -- -0.558 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 553.73 radiation 10.0 10 < th dose dependent rect. 24 17
3 560.84 radiation 10.0 10 < th dose dependent sin 5 NA
8 570.55 radiation 1.0 30 < th dose independent sin 5 NA
12 572.85 radiation 1.0 30 > th dose independent sin 5 NA
31 583.94 radiation 1.0 30 < th dose independent rect. 24 16
41 587.15 radiation 1.0 30 < th dose independent rect. 24 14
70 593.21 radiation 1.0 30 < th dose independent rect. 24 12
77 593.93 radiation 1.0 30 < th dose independent rect. 24 8
83 594.84 radiation 40.0 10 < th dose independent rect. 12 17
85 595.07 radiation 1.0 30 > th dose independent rect. 5 8
106 596.28 radiation 40.0 90 < th dose independent rect. 13 15
167 602.62 radiation 1.0 30 < th dose dependent rect. 24 8
226 608.99 precipitation 0.1 270 < th dose independent rect. 3 8
227 608.99 precipitation 0.1 270 < th dose dependent rect. 3 8
267 610.57 temperature 15.0 90 > th dose independent rect. 4 9
287 612.23 radiation 40.0 270 < th dose independent rect. 22 18
296 613.25 humidity 50.0 10 > th dose dependent rect. 24 17
297 613.41 radiation 40.0 270 < th dose independent rect. 23 16
307 614.08 temperature 10.0 90 > th dose dependent rect. 4 9
312 614.27 wind 9.0 270 < th dose independent rect. 4 18
313 614.28 temperature 10.0 10 > th dose dependent rect. 5 8
319 614.65 wind 9.0 270 < th dose dependent rect. 3 8
323 614.92 precipitation 0.1 270 < th dose independent rect. 3 20
324 614.92 precipitation 0.1 270 < th dose dependent rect. 3 20
325 614.94 wind 9.0 270 < th dose independent rect. 22 6
327 614.96 temperature 10.0 270 > th dose independent rect. 22 6
328 614.96 temperature 30.0 270 < th dose independent rect. 22 6
329 614.96 humidity 50.0 270 > th dose independent rect. 22 6
332 614.96 atmosphere 995.0 270 > th dose independent rect. 22 6
333 614.96 radiation 1.0 270 < th dose independent rect. 22 6
338 614.96 temperature 10.0 270 > th dose independent rect. 4 18
339 614.96 radiation 1.0 270 < th dose dependent rect. 22 6
349 615.34 precipitation 0.1 270 < th dose independent rect. 4 18
351 615.34 precipitation 0.1 270 < th dose dependent rect. 4 18
367 616.30 radiation 40.0 10 < th dose dependent rect. 12 17
371 616.63 radiation 1.0 270 < th dose independent rect. 21 18
375 616.84 humidity 50.0 270 > th dose independent rect. 3 8
399 617.82 wind 9.0 270 < th dose independent rect. 3 20
400 617.86 temperature 10.0 270 > th dose independent rect. 23 4
401 617.86 temperature 30.0 270 < th dose independent rect. 23 4
402 617.86 humidity 50.0 270 > th dose independent rect. 23 4
405 617.86 atmosphere 995.0 270 > th dose independent rect. 23 4
406 617.86 radiation 1.0 270 < th dose independent rect. 23 4
411 617.86 temperature 10.0 270 > th dose independent rect. 3 20
412 617.86 radiation 1.0 270 < th dose dependent rect. 23 4
423 617.92 wind 9.0 270 < th dose independent rect. 23 4
430 618.25 temperature 10.0 270 > th dose dependent rect. 23 3
438 618.58 atmosphere 1015.0 270 < th dose independent rect. 22 6
439 618.60 atmosphere 1015.0 270 < th dose independent rect. 23 4
444 618.76 precipitation 0.1 270 < th dose independent rect. 23 4
445 618.76 precipitation 0.1 270 < th dose dependent rect. 23 4
461 619.61 temperature 10.0 270 > th dose dependent rect. 22 6
462 619.66 wind 7.0 270 < th dose independent rect. 3 8
474 619.98 atmosphere 995.0 270 > th dose independent rect. 3 8
475 619.98 atmosphere 1015.0 270 < th dose independent rect. 3 8
476 619.98 temperature 10.0 270 > th dose independent rect. 11 16
489 620.88 temperature 10.0 90 > th dose independent rect. 13 15
495 621.15 precipitation 0.1 270 < th dose independent rect. 22 6
496 621.15 precipitation 0.1 270 < th dose dependent rect. 22 6
546 624.36 wind 9.0 90 < th dose independent rect. 13 15
549 624.62 wind 9.0 270 < th dose independent rect. 11 16
555 624.92 precipitation 0.1 270 < th dose independent rect. 11 16
556 624.92 precipitation 0.1 270 < th dose dependent rect. 11 16
575 625.67 wind 1.0 90 > th dose independent rect. 24 17
619 626.76 atmosphere 1015.0 270 < th dose independent rect. 23 16
630 627.06 temperature 10.0 270 > th dose independent rect. 15 8
631 627.06 temperature 10.0 270 > th dose independent rect. 23 16
649 627.51 atmosphere 995.0 270 > th dose independent rect. 23 16
664 627.98 temperature 10.0 10 > th dose dependent rect. 24 5
668 628.11 radiation 20.0 10 < th dose independent rect. 24 17
673 628.31 wind 9.0 270 < th dose independent rect. 15 8
675 628.33 radiation 40.0 270 < th dose independent rect. 16 7
706 629.22 temperature 10.0 270 > th dose dependent rect. 24 1
711 629.50 atmosphere 1015.0 270 < th dose independent rect. 4 18
712 629.54 precipitation 0.1 90 < th dose independent rect. 13 15
713 629.54 precipitation 0.1 90 < th dose dependent rect. 13 15
731 629.92 atmosphere 995.0 270 > th dose independent rect. 4 18
732 629.93 wind 1.0 270 > th dose independent rect. 16 7
761 630.35 wind 9.0 270 < th dose independent rect. 23 16
774 630.75 wind 9.0 10 < th dose independent rect. 5 19
790 631.36 wind 9.0 10 < th dose independent rect. 5 8
795 631.55 humidity 80.0 10 > th dose independent rect. 24 5
796 631.57 temperature 10.0 10 > th dose dependent rect. 5 19
803 631.68 humidity 50.0 10 > th dose dependent rect. 24 5
824 631.89 wind 9.0 10 < th dose dependent rect. 24 5
825 631.92 precipitation 0.1 10 < th dose independent rect. 5 8
826 631.92 precipitation 0.1 10 < th dose dependent rect. 5 8
864 632.68 atmosphere 1015.0 10 < th dose independent rect. 24 5
872 632.78 wind 9.0 10 < th dose independent rect. 24 5
873 632.78 temperature 10.0 10 > th dose independent rect. 24 5
874 632.78 temperature 30.0 10 < th dose independent rect. 24 5
875 632.78 humidity 50.0 10 > th dose independent rect. 24 5
878 632.78 atmosphere 995.0 10 > th dose independent rect. 24 5
885 632.78 temperature 10.0 10 > th dose independent rect. 5 19
893 632.98 wind 9.0 30 < th dose dependent rect. 5 8
901 633.39 wind 9.0 270 < th dose dependent rect. 23 4
923 633.92 atmosphere 995.0 270 > th dose independent rect. 16 7
924 633.94 radiation 40.0 270 < th dose dependent rect. 16 6
949 634.34 atmosphere 995.0 270 > th dose independent rect. 3 20
960 634.54 precipitation 0.1 10 < th dose independent rect. 5 19
961 634.54 precipitation 0.1 10 < th dose dependent rect. 5 19
964 634.65 humidity 50.0 270 > th dose dependent rect. 23 4
971 634.85 precipitation 0.1 270 < th dose independent rect. 16 7
973 634.85 precipitation 0.1 270 < th dose dependent rect. 16 7
989 635.33 atmosphere 995.0 90 > th dose independent rect. 13 15