Os04g0118800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os04g0118800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 209.31 | 0.68 | 3.07 | 0.671 | 0.611 | 1.15 | 0.138 | 1.75 | 0.579 | 17.8 | 25.49 | 10 | -- | -- |
| 214.73 | 0.682 | 3.05 | 0.913 | 0.59 | 1.07 | -0.101 | -- | 0.617 | 17.8 | 25.5 | 9 | -- | -- |
| 209.35 | 0.674 | 3.07 | 0.673 | 0.613 | 1.15 | -- | 1.73 | 0.582 | 17.8 | 25.49 | 9 | -- | -- |
| 214.67 | 0.682 | 3.04 | 0.937 | 0.612 | 1.03 | -- | -- | 0.641 | 17.9 | 25.88 | 11 | -- | -- |
| 225.69 | 0.7 | 3.08 | 0.65 | -- | 1.15 | -- | 1.9 | 0.515 | -- | 24.1 | 7 | -- | -- |
| 229.5 | 0.71 | 3.09 | 0.707 | 0.534 | -- | 0.6 | -- | 0.418 | 19.9 | -- | -- | -- | -- |
| 230.3 | 0.711 | 3.09 | 0.694 | 0.543 | -- | -- | -- | 0.42 | 19.4 | -- | -- | -- | -- |
| 231.55 | 0.709 | 3.05 | 0.895 | -- | 0.944 | -- | -- | 0.566 | -- | 24.23 | 7 | -- | -- |
| 235.67 | 0.715 | 3.08 | -- | 0.557 | 0.679 | -- | -- | 0.462 | 18.5 | 25.5 | 5 | -- | -- |
| 246.01 | 0.733 | 3.08 | 0.685 | -- | -- | -- | -- | 0.411 | -- | -- | -- | -- | -- |
| 242.98 | 0.729 | 3.11 | -- | 0.537 | -- | -- | -- | 0.343 | 19.5 | -- | -- | -- | -- |
| 251.1 | 0.738 | 3.08 | -- | -- | 0.642 | -- | -- | 0.427 | -- | 24.3 | 6 | -- | -- |
| 258.38 | 0.75 | 3.1 | -- | -- | -- | -- | -- | 0.335 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 202.54 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 2 | 202.61 | wind | 1 | 270 | < th | dose dependent | rect. | 21 | 1 |
| 3 | 203.11 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 1 |
| 10 | 205.75 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 11 |
| 11 | 205.75 | temperature | 25 | 90 | < th | dose dependent | rect. | 18 | 12 |
| 18 | 206.07 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 20 |
| 30 | 206.30 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 5 |
| 38 | 206.56 | temperature | 25 | 90 | < th | dose dependent | rect. | 12 | 18 |
| 45 | 206.93 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 15 |
| 76 | 207.53 | temperature | 30 | 270 | < th | dose dependent | sin | 14 | NA |
| 94 | 207.70 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 13 |
| 132 | 208.04 | temperature | 20 | 270 | > th | dose dependent | sin | 12 | NA |
| 134 | 208.06 | temperature | 20 | 10 | > th | dose dependent | sin | 11 | NA |
| 143 | 208.12 | temperature | 25 | 90 | < th | dose dependent | rect. | 9 | 21 |
| 153 | 208.18 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 12 |
| 156 | 208.22 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 6 |
| 157 | 208.23 | temperature | 10 | 270 | > th | dose dependent | sin | 12 | NA |
| 170 | 208.31 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 173 | 208.35 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 21 |
| 281 | 208.90 | temperature | 25 | 720 | > th | dose independent | rect. | 19 | 2 |
| 295 | 208.95 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 374 | 209.29 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 375 | 209.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 389 | 209.35 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 9 |
| 393 | 209.36 | temperature | 10 | 10 | > th | dose dependent | sin | 11 | NA |
| 401 | 209.41 | temperature | 20 | 720 | > th | dose dependent | sin | 15 | NA |
| 414 | 209.45 | wind | 1 | 270 | < th | dose dependent | rect. | 17 | 5 |
| 425 | 209.47 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 428 | 209.48 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 434 | 209.49 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 471 | 209.60 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 9 |
| 488 | 209.63 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 497 | 209.66 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 498 | 209.66 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 511 | 209.75 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 5 |
| 588 | 210.11 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 678 | 210.37 | temperature | 25 | 720 | > th | dose independent | sin | 17 | NA |
| 856 | 210.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 7 |
| 889 | 211.08 | wind | 1 | 270 | < th | dose independent | rect. | 21 | 1 |
| 972 | 211.30 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 13 |
| 986 | 211.33 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 15 |