FiT-DB / Search/ Help/ Sample detail

Os04g0118700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.92 (0.0302) R2 : 0.746
β1 : 1.37 (0.11) R2dD : 0.0794 R2D : 0.0544
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.33 (0.0696) R2dE : 0.645 R2E : 0.643
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.508 (0.0644) R2dN8 : 0.0452 R2N8 : 0.0169
σ : 0.564
deviance : 146.78
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 27.3
memory length : 313
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.15
open length of G : 8.93

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
132.54 0.541 9.97 1.23 1.41 -1.4 -2.72 -0.915 0.38 20.2 24.96 269 1.82 8.38
133.96 0.539 9.99 1.15 1.32 -1.46 -2.07 -- 0.317 20 24.95 266 1.81 8.6
138.93 0.549 9.97 1.28 1.38 -1.5 -- 0.896 0.428 20.4 25.2 264 1.9 7.98
142.99 0.557 9.96 1.24 1.26 -1.51 -- -- 0.41 20.3 25.16 264 1.88 8.48
147.92 0.566 9.88 1.39 -- -2.19 -- 1.25 0.581 -- 28.5 235 2.01 8.58
177.23 0.624 9.96 1.3 2.46 -- -2.02 -- 0.557 19.9 -- -- -- --
189.17 0.644 9.96 1.36 2.46 -- -- -- 0.556 19.9 -- -- -- --
146.78 0.564 9.92 1.37 -- -2.33 -- -- 0.508 -- 27.3 313 1.15 8.93
183.04 0.63 10 -- 1.26 -1.55 -- -- 0.269 20.2 25.15 267 1.82 8.96
519.34 1.06 9.9 1.33 -- -- -- -- 0.523 -- -- -- -- --
237.9 0.722 9.99 -- 2.45 -- -- -- 0.404 19.9 -- -- -- --
184.09 0.632 9.96 -- -- -2.53 -- -- 0.3 -- 26.3 379 0.529 9.3
566.23 1.11 9.93 -- -- -- -- -- 0.375 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 133.34 temperature 25.0 270 < th dose independent rect. 2 8
3 133.82 temperature 10.0 270 > th dose dependent rect. 21 16
12 137.16 temperature 30.0 270 < th dose dependent rect. 2 7
14 137.22 temperature 30.0 270 < th dose dependent rect. 1 9
19 138.33 atmosphere 1000.0 10 > th dose independent rect. 5 18
32 140.34 temperature 10.0 270 > th dose dependent rect. 6 8
35 140.44 atmosphere 995.0 10 > th dose dependent rect. 5 18
37 140.57 temperature 30.0 90 < th dose dependent rect. 4 7
38 140.59 radiation 20.0 10 < th dose dependent rect. 5 18
42 140.87 temperature 10.0 10 > th dose dependent rect. 23 17
43 140.92 radiation 10.0 10 < th dose independent rect. 5 18
53 141.16 radiation 1.0 30 < th dose dependent rect. 23 9
61 141.33 radiation 1.0 10 < th dose dependent rect. 23 7
64 141.37 temperature 25.0 270 > th dose independent rect. 23 14
66 141.43 radiation 1.0 30 < th dose independent rect. 23 9
97 142.00 radiation 1.0 10 < th dose independent rect. 23 7
108 142.20 wind 7.0 10 < th dose independent rect. 23 6
117 142.35 temperature 10.0 10 > th dose independent rect. 23 6
118 142.35 temperature 30.0 10 < th dose independent rect. 23 6
119 142.35 humidity 50.0 10 > th dose independent rect. 23 6
122 142.35 atmosphere 995.0 10 > th dose independent rect. 23 6
128 142.35 temperature 10.0 10 > th dose independent rect. 5 18
130 142.35 atmosphere 1015.0 10 < th dose independent rect. 5 18
145 142.55 precipitation 0.1 10 < th dose independent rect. 5 18
146 142.55 precipitation 0.1 10 < th dose dependent rect. 5 18
158 142.90 radiation 40.0 270 < th dose dependent rect. 2 8
167 143.21 wind 1.0 30 > th dose independent rect. 23 6
204 143.58 precipitation 0.1 10 < th dose independent rect. 23 6
205 143.58 precipitation 0.1 10 < th dose dependent rect. 23 6
222 144.01 wind 9.0 10 < th dose independent rect. 5 18
232 144.29 wind 1.0 90 > th dose independent rect. 23 16
237 144.44 humidity 50.0 10 > th dose dependent rect. 23 6
239 144.48 wind 7.0 270 < th dose independent rect. 21 16
279 144.96 temperature 20.0 10 > th dose dependent rect. 8 8
302 145.09 radiation 40.0 90 < th dose independent rect. 4 18
316 145.30 radiation 20.0 270 < th dose independent rect. 2 7
325 145.47 wind 7.0 270 < th dose independent rect. 6 21
333 145.55 atmosphere 995.0 10 > th dose dependent rect. 16 7
368 145.76 wind 7.0 270 < th dose independent rect. 7 8
369 145.76 wind 9.0 270 < th dose independent rect. 6 10
376 145.82 precipitation 0.1 270 < th dose independent rect. 3 3
377 145.82 precipitation 0.1 270 < th dose dependent rect. 3 3
383 145.90 wind 7.0 270 < th dose independent rect. 8 18
395 146.06 temperature 25.0 270 < th dose independent sin 5 NA
400 146.11 wind 1.0 270 > th dose independent rect. 7 9
414 146.20 wind 5.0 270 < th dose independent rect. 3 3
416 146.21 radiation 20.0 90 < th dose independent rect. 4 7
417 146.25 radiation 40.0 270 < th dose independent rect. 1 9
430 146.38 temperature 25.0 270 > th dose independent sin 6 NA
433 146.42 temperature 25.0 270 > th dose independent rect. 7 7
438 146.47 temperature 30.0 270 < th dose dependent rect. 1 18
442 146.50 temperature 30.0 90 < th dose dependent rect. 4 17
455 146.63 wind 1.0 10 > th dose independent rect. 16 7
460 146.69 atmosphere 1000.0 10 > th dose independent rect. 16 7
474 146.84 wind 9.0 90 < th dose dependent rect. 22 6
483 146.89 radiation 1.0 30 > th dose independent sin 10 NA
484 146.90 temperature 15.0 270 > th dose independent rect. 13 8
490 146.92 precipitation 0.1 270 < th dose independent rect. 2 6
491 146.92 atmosphere 1010.0 270 < th dose independent rect. 13 8
492 146.92 precipitation 0.1 270 < th dose dependent rect. 2 6
495 146.95 atmosphere 995.0 10 > th dose dependent rect. 23 6
505 147.01 atmosphere 1015.0 10 < th dose independent rect. 23 6
530 147.04 radiation 30.0 270 < th dose independent rect. 16 14
537 147.07 atmosphere 995.0 270 > th dose independent rect. 16 15
569 147.25 radiation 40.0 90 < th dose dependent rect. 4 7
572 147.29 wind 5.0 270 < th dose independent rect. 23 1
573 147.29 temperature 10.0 270 > th dose independent rect. 6 10
574 147.29 atmosphere 1015.0 270 < th dose independent rect. 6 10
575 147.29 temperature 10.0 270 > th dose independent rect. 16 14
611 147.33 temperature 10.0 270 > th dose independent rect. 3 3
614 147.33 humidity 50.0 270 > th dose independent rect. 3 3
617 147.33 atmosphere 995.0 270 > th dose independent rect. 3 3
618 147.33 atmosphere 1015.0 270 < th dose independent rect. 3 3
619 147.33 radiation 20.0 270 < th dose independent rect. 3 3
622 147.33 temperature 10.0 270 > th dose independent rect. 6 21
630 147.37 wind 9.0 270 < th dose dependent rect. 7 19
632 147.40 wind 9.0 10 < th dose dependent rect. 23 6
633 147.41 wind 9.0 30 < th dose independent rect. 23 17
634 147.41 precipitation 0.1 270 < th dose independent rect. 6 21
637 147.41 precipitation 0.1 270 < th dose dependent rect. 6 21
644 147.44 wind 5.0 270 < th dose independent rect. 2 5
645 147.44 precipitation 0.1 270 < th dose independent rect. 1 8
646 147.44 temperature 25.0 270 > th dose independent rect. 4 10
648 147.44 precipitation 0.1 270 < th dose dependent rect. 1 8
665 147.51 radiation 20.0 270 < th dose dependent rect. 2 17
673 147.54 radiation 40.0 270 < th dose independent rect. 13 8
682 147.57 precipitation 0.1 270 < th dose independent rect. 7 9
683 147.57 wind 9.0 270 < th dose dependent rect. 3 3
684 147.57 precipitation 0.1 270 < th dose dependent rect. 7 9
685 147.58 radiation 1.0 30 > th dose independent rect. 18 14
691 147.62 radiation 40.0 270 < th dose dependent rect. 1 20
704 147.67 radiation 30.0 10 < th dose independent rect. 16 7
710 147.69 wind 9.0 270 < th dose independent rect. 16 15
714 147.71 temperature 10.0 10 > th dose independent rect. 16 7
716 147.71 atmosphere 1010.0 10 < th dose independent rect. 16 7
719 147.71 temperature 10.0 10 > th dose independent rect. 23 17
724 147.73 radiation 1.0 30 > th dose independent rect. 5 3
742 147.74 radiation 40.0 10 < th dose dependent rect. 12 11
748 147.76 radiation 40.0 10 < th dose dependent rect. 16 7
781 147.81 radiation 40.0 10 < th dose dependent rect. 14 9
786 147.84 radiation 40.0 270 < th dose dependent rect. 3 3
796 147.89 precipitation 0.1 270 < th dose independent rect. 23 1
801 147.89 precipitation 0.1 270 < th dose dependent rect. 23 1
805 147.90 temperature 10.0 270 > th dose independent rect. 23 1
806 147.90 temperature 30.0 270 < th dose independent rect. 23 1
807 147.90 humidity 50.0 270 > th dose independent rect. 23 1
810 147.90 atmosphere 995.0 270 > th dose independent rect. 23 1
811 147.90 radiation 1.0 270 < th dose independent rect. 23 1
817 147.90 temperature 10.0 270 > th dose independent rect. 24 23
818 147.90 radiation 1.0 270 < th dose dependent rect. 23 1
826 147.92 temperature 25.0 270 < th dose independent rect. 4 1
828 147.92 precipitation 0.1 270 < th dose independent rect. 16 15
829 147.92 precipitation 0.1 270 < th dose dependent rect. 16 15
842 147.96 precipitation 0.1 270 < th dose independent rect. 7 19
845 147.96 precipitation 0.1 270 < th dose dependent rect. 7 19
850 147.98 temperature 10.0 1440 > th dose independent rect. 24 5
853 147.98 temperature 30.0 1440 < th dose independent rect. 24 5
857 147.98 humidity 50.0 1440 > th dose independent rect. 24 5
866 147.98 atmosphere 995.0 1440 > th dose independent rect. 24 5
867 147.98 radiation 20.0 1440 < th dose independent rect. 24 5
879 147.98 temperature 10.0 1440 > th dose independent rect. 5 19
883 147.99 precipitation 0.1 10 < th dose independent rect. 16 7
886 147.99 precipitation 0.1 10 < th dose dependent rect. 16 7
910 148.06 temperature 10.0 270 > th dose independent rect. 21 16
911 148.06 atmosphere 995.0 270 > th dose independent rect. 21 16
912 148.08 atmosphere 995.0 270 > th dose independent rect. 13 8
928 148.13 temperature 10.0 270 > th dose independent rect. 2 5
931 148.13 humidity 50.0 270 > th dose independent rect. 2 5
933 148.13 atmosphere 995.0 270 > th dose independent rect. 2 5
934 148.13 atmosphere 1015.0 270 < th dose independent rect. 2 5
935 148.13 radiation 40.0 270 < th dose independent rect. 2 5
936 148.13 temperature 10.0 270 > th dose independent rect. 7 19
939 148.14 temperature 30.0 90 < th dose dependent rect. 4 15
947 148.16 radiation 1.0 30 < th dose dependent sin 10 NA
976 148.21 wind 9.0 10 < th dose independent rect. 16 7
985 148.22 radiation 10.0 270 < th dose independent rect. 2 17