Os04g0117300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SEC7-like domain containing protein.
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Os04g0117300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SEC7-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123.15 | 0.521 | 2.97 | -0.068 | 0.0771 | -7.42 | 0.076 | 25.5 | 0.00549 | 11.8 | 0.858 | 6 | -- | -- |
| 132.85 | 0.537 | 2.95 | -0.052 | 0.0261 | -0.24 | -0.54 | -- | -0.0194 | 4.33 | 6.017 | 3 | -- | -- |
| 123.22 | 0.517 | 2.97 | -0.0831 | 0.0865 | -7.96 | -- | 27.5 | -0.00454 | 11.6 | 1.952 | 5 | -- | -- |
| 133.23 | 0.541 | 2.95 | -0.038 | 0.0849 | 0.289 | -- | -- | -0.0186 | 8.77 | 1.952 | 5 | -- | -- |
| 123.55 | 0.518 | 2.97 | -0.0731 | -- | -8.29 | -- | 28.8 | 0.00445 | -- | 3.983 | 5 | -- | -- |
| 132.92 | 0.54 | 2.95 | -0.0462 | 0.03 | -- | -0.528 | -- | -0.021 | 4.4 | -- | -- | -- | -- |
| 133.31 | 0.541 | 2.95 | -0.0408 | 0.084 | -- | -- | -- | -0.0181 | 8.88 | -- | -- | -- | -- |
| 133.59 | 0.538 | 2.95 | -0.0456 | -- | -0.334 | -- | -- | -0.0161 | -- | 2.62 | 5 | -- | -- |
| 133.23 | 0.538 | 2.95 | -- | 0.0808 | 0.282 | -- | -- | -0.0158 | 8.96 | 1.844 | 49 | -- | -- |
| 133.71 | 0.54 | 2.95 | -0.0408 | -- | -- | -- | -- | -0.0175 | -- | -- | -- | -- | -- |
| 133.36 | 0.54 | 2.95 | -- | 0.084 | -- | -- | -- | -0.0135 | 8.92 | -- | -- | -- | -- |
| 133.59 | 0.538 | 2.95 | -- | -- | 0.307 | -- | -- | -0.0162 | -- | 1 | 49 | -- | -- |
| 133.76 | 0.54 | 2.95 | -- | -- | -- | -- | -- | -0.0129 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 109.76 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 3 | 5 |
| 21 | 109.76 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 3 | 5 |
| 41 | 109.77 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 3 | 3 |
| 45 | 109.77 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 57 | 114.52 | precipitation | 0.1 | 10 | > th | dose independent | sin | 2 | NA |
| 58 | 114.52 | precipitation | 0.1 | 10 | > th | dose dependent | sin | 2 | NA |
| 59 | 114.61 | precipitation | 0.1 | 10 | < th | dose independent | sin | 2 | NA |
| 60 | 114.61 | precipitation | 0.1 | 10 | < th | dose dependent | sin | 2 | NA |
| 109 | 120.25 | wind | 1.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 110 | 120.27 | wind | 1.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 111 | 120.31 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 3 | 1 |
| 115 | 120.31 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 124 | 120.65 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 3 | 4 |
| 128 | 120.66 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 3 | 4 |
| 146 | 121.22 | wind | 3.0 | 30 | > th | dose independent | rect. | 5 | 2 |
| 279 | 122.10 | temperature | 20.0 | 10 | < th | dose independent | rect. | 19 | 1 |
| 283 | 122.11 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 20 | 1 |
| 314 | 122.26 | wind | 3.0 | 30 | > th | dose dependent | rect. | 5 | 2 |
| 430 | 122.64 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 4 | 1 |
| 457 | 122.88 | precipitation | 0.1 | 90 | > th | dose independent | sin | 6 | NA |
| 478 | 122.93 | humidity | 90.0 | 90 | > th | dose independent | rect. | 18 | 1 |
| 480 | 122.95 | precipitation | 0.1 | 90 | > th | dose dependent | sin | 6 | NA |
| 481 | 122.97 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 18 | 2 |
| 534 | 123.27 | precipitation | 0.1 | 90 | < th | dose independent | sin | 6 | NA |
| 536 | 123.27 | precipitation | 0.1 | 90 | < th | dose dependent | sin | 6 | NA |
| 884 | 125.20 | radiation | 1.0 | 10 | < th | dose independent | rect. | 6 | 1 |
| 914 | 125.31 | wind | 3.0 | 10 | < th | dose dependent | rect. | 20 | 1 |
| 935 | 125.41 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 5 | 23 |
| 937 | 125.41 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 16 | 4 |
| 966 | 125.46 | precipitation | 0.1 | 10 | > th | dose independent | no | NA | NA |
| 967 | 125.46 | precipitation | 0.1 | 10 | < th | dose independent | no | NA | NA |