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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0116900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF827, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.48 (0.0266) R2 : 0.00802
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.107 (0.0559) R2dN8 : 0.0104 R2N8 : 0.00802
σ : 0.5
deviance : 114.77
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
96.83 0.462 3.48 -0.554 0.538 0.469 -1.37 -1.75 0.0729 10.7 20 25 -- --
100.57 0.467 3.48 -0.576 0.524 0.46 0.386 -- 0.0412 10.9 21.94 4 -- --
98.6 0.462 3.48 -0.563 0.545 0.488 -- -0.763 0.0659 10.8 22.62 13 -- --
101.06 0.468 3.48 -0.553 0.531 0.465 -- -- 0.0575 10.9 22.62 13 -- --
103.33 0.473 3.5 -0.6 -- 0.0942 -- -0.799 0.0444 -- 40 18 -- --
104.14 0.478 3.5 -0.578 0.147 -- -0.6 -- 0.0373 5.06 -- -- -- --
104.67 0.479 3.49 -0.576 0.167 -- -- -- 0.0407 6.94 -- -- -- --
105.66 0.481 3.5 -0.57 -- 0.087 -- -- 0.0436 -- 33.73 14 -- --
109.29 0.487 3.47 -- 0.548 0.483 -- -- 0.117 10.9 22.62 13 -- --
106.13 0.481 3.5 -0.572 -- -- -- -- 0.0438 -- -- -- -- --
113.41 0.498 3.48 -- 0.16 -- -- -- 0.105 7.16 -- -- -- --
114.23 0.499 3.48 -- -- 0.0927 -- -- 0.107 -- 33.73 14 -- --
114.77 0.5 3.48 -- -- -- -- -- 0.107 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 86.34 precipitation 0.1 270 > th dose independent rect. 2 2
2 86.34 precipitation 0.1 270 > th dose dependent rect. 2 2
3 88.12 precipitation 0.1 270 > th dose independent rect. 24 4
4 88.12 precipitation 0.1 270 > th dose dependent rect. 24 4
13 89.36 temperature 20.0 270 > th dose independent rect. 1 5
24 90.46 wind 7.0 4320 > th dose independent rect. 17 1
25 90.48 wind 7.0 4320 < th dose independent rect. 17 1
26 90.64 temperature 10.0 270 > th dose dependent rect. 1 5
27 90.67 radiation 1.0 1440 > th dose independent rect. 10 4
31 90.75 radiation 1.0 1440 > th dose independent rect. 13 1
42 90.84 radiation 1.0 1440 < th dose independent rect. 10 4
44 90.84 radiation 1.0 1440 < th dose dependent rect. 10 4
46 90.85 radiation 1.0 1440 < th dose independent rect. 10 2
48 90.85 radiation 1.0 1440 < th dose dependent rect. 10 2
57 90.93 wind 5.0 270 < th dose independent rect. 18 7
60 90.96 radiation 1.0 1440 < th dose independent rect. 13 1
61 90.96 radiation 1.0 1440 < th dose dependent rect. 13 1
99 91.68 temperature 10.0 90 > th dose dependent rect. 1 8
101 91.74 radiation 30.0 90 < th dose independent rect. 1 8
104 91.76 wind 9.0 270 < th dose dependent rect. 18 7
108 91.84 radiation 10.0 270 < th dose independent rect. 1 5
109 91.84 temperature 20.0 30 > th dose independent rect. 1 8
119 91.95 radiation 20.0 10 < th dose independent rect. 2 7
120 91.97 wind 5.0 4320 > th dose dependent rect. 17 2
131 92.04 atmosphere 1000.0 270 > th dose independent rect. 6 19
132 92.05 wind 1.0 270 > th dose independent rect. 19 6
133 92.05 radiation 10.0 270 < th dose dependent rect. 1 5
144 92.16 wind 1.0 90 > th dose independent rect. 9 16
145 92.17 atmosphere 1015.0 270 < th dose dependent rect. 1 5
146 92.18 atmosphere 1000.0 90 > th dose independent rect. 9 16
152 92.22 wind 1.0 270 > th dose dependent rect. 1 5
157 92.26 humidity 60.0 90 > th dose independent rect. 1 8
159 92.27 radiation 40.0 90 < th dose dependent rect. 1 8
172 92.35 atmosphere 1000.0 270 > th dose independent rect. 19 6
177 92.39 wind 1.0 270 > th dose independent rect. 6 19
180 92.41 temperature 10.0 90 > th dose independent rect. 1 8
183 92.41 atmosphere 995.0 90 > th dose independent rect. 1 8
184 92.41 atmosphere 1015.0 90 < th dose independent rect. 1 8
185 92.41 temperature 10.0 90 > th dose independent rect. 9 16
188 92.42 wind 9.0 90 < th dose independent rect. 1 8
189 92.42 radiation 40.0 30 < th dose dependent rect. 13 20
198 92.49 humidity 80.0 270 > th dose independent rect. 1 5
199 92.49 humidity 50.0 270 > th dose dependent rect. 1 5
203 92.51 wind 1.0 90 > th dose dependent rect. 4 3
211 92.53 precipitation 0.1 90 < th dose independent rect. 9 16
216 92.53 precipitation 0.1 90 < th dose dependent rect. 9 16
217 92.55 atmosphere 1010.0 270 < th dose independent rect. 1 5
218 92.55 radiation 1.0 10 > th dose independent rect. 9 8
221 92.57 temperature 30.0 90 < th dose independent rect. 1 8
230 92.61 temperature 20.0 10 > th dose independent rect. 2 5
231 92.61 atmosphere 1000.0 270 > th dose independent rect. 1 5
233 92.62 radiation 10.0 270 < th dose independent rect. 18 7
235 92.62 radiation 1.0 270 < th dose dependent rect. 18 7
237 92.62 humidity 50.0 90 > th dose dependent rect. 1 8
238 92.64 temperature 10.0 270 > th dose independent rect. 1 5
240 92.64 temperature 30.0 270 < th dose independent rect. 1 5
241 92.64 humidity 50.0 270 > th dose independent rect. 1 5
249 92.64 humidity 60.0 270 > th dose independent rect. 19 6
250 92.64 temperature 10.0 270 > th dose independent rect. 6 19
257 92.66 wind 9.0 270 < th dose independent rect. 1 5
265 92.67 wind 9.0 270 < th dose independent rect. 6 19
269 92.69 temperature 10.0 270 > th dose independent rect. 19 6
270 92.69 temperature 30.0 270 < th dose independent rect. 19 6
278 92.69 temperature 10.0 270 > th dose independent rect. 1 18
279 92.69 atmosphere 1015.0 270 < th dose independent rect. 1 18
288 92.70 atmosphere 1000.0 10 > th dose independent rect. 9 17
298 92.73 precipitation 0.1 270 < th dose independent rect. 19 6
299 92.73 radiation 40.0 10 < th dose independent rect. 2 7
301 92.73 precipitation 0.1 270 < th dose dependent rect. 19 6
303 92.74 precipitation 0.1 270 < th dose independent rect. 6 19
307 92.74 precipitation 0.1 270 < th dose dependent rect. 6 19
309 92.75 precipitation 0.1 90 < th dose independent rect. 1 8
310 92.75 precipitation 0.1 90 < th dose dependent rect. 1 8
315 92.77 wind 5.0 270 < th dose independent rect. 21 1
321 92.80 wind 9.0 90 < th dose independent rect. 9 16
332 92.82 radiation 1.0 30 > th dose independent sin 0 NA
371 92.96 precipitation 0.1 270 < th dose independent rect. 1 5
372 92.96 precipitation 0.1 270 < th dose independent rect. 1 18
373 92.96 precipitation 0.1 270 < th dose dependent rect. 1 5
374 92.96 precipitation 0.1 270 < th dose dependent rect. 1 18
379 92.98 humidity 50.0 90 > th dose independent rect. 9 16
380 92.99 atmosphere 995.0 270 > th dose independent rect. 1 18
382 93.00 radiation 1.0 90 > th dose independent rect. 7 9
385 93.01 wind 9.0 270 < th dose independent rect. 1 18
390 93.05 humidity 70.0 10 > th dose independent rect. 2 7
397 93.06 wind 1.0 270 > th dose independent rect. 1 5
403 93.07 radiation 10.0 4320 < th dose dependent rect. 22 7
404 93.08 atmosphere 1015.0 90 < th dose independent rect. 9 16
415 93.11 radiation 20.0 10 < th dose independent rect. 17 16
417 93.11 humidity 50.0 270 > th dose independent rect. 6 19
425 93.14 atmosphere 1000.0 10 > th dose independent rect. 2 7
428 93.15 wind 9.0 10 < th dose independent rect. 2 7
429 93.15 temperature 10.0 10 > th dose independent rect. 2 7
431 93.15 temperature 30.0 10 < th dose independent rect. 2 7
432 93.15 humidity 50.0 10 > th dose independent rect. 2 7
435 93.15 atmosphere 1015.0 10 < th dose independent rect. 2 7
438 93.15 temperature 10.0 10 > th dose independent rect. 9 17
440 93.16 atmosphere 1000.0 270 > th dose independent rect. 6 9
448 93.18 precipitation 0.1 10 > th dose independent rect. 3 3
453 93.18 temperature 10.0 1440 > th dose independent rect. 2 8
456 93.18 humidity 50.0 4320 > th dose independent rect. 2 8
457 93.18 atmosphere 995.0 1440 > th dose independent rect. 2 8
458 93.18 temperature 10.0 1440 > th dose independent rect. 10 16
462 93.18 precipitation 0.1 10 > th dose dependent rect. 3 3
469 93.20 wind 7.0 270 < th dose dependent rect. 21 1
514 93.21 wind 1.0 10 > th dose dependent rect. 4 3
525 93.26 radiation 1.0 30 < th dose independent rect. 5 9
536 93.27 precipitation 0.1 10 < th dose independent rect. 9 17
539 93.27 precipitation 0.1 10 < th dose dependent rect. 9 17
550 93.29 radiation 40.0 10 < th dose dependent rect. 2 7
562 93.33 temperature 10.0 270 > th dose independent rect. 6 9
563 93.33 atmosphere 1015.0 270 < th dose independent rect. 6 9
564 93.33 temperature 10.0 270 > th dose independent rect. 15 15
591 93.38 radiation 40.0 4320 < th dose dependent rect. 22 7
608 93.42 humidity 50.0 270 > th dose independent rect. 6 9
609 93.42 temperature 30.0 30 < th dose independent rect. 9 17
616 93.44 precipitation 0.1 270 < th dose independent rect. 6 9
619 93.44 precipitation 0.1 270 < th dose dependent rect. 6 9
624 93.45 wind 9.0 10 < th dose independent rect. 9 17
642 93.48 radiation 40.0 270 < th dose independent rect. 13 17
643 93.48 humidity 50.0 270 > th dose independent rect. 1 18
653 93.49 precipitation 0.1 270 < th dose independent rect. 20 14
660 93.49 precipitation 0.1 270 < th dose dependent rect. 20 14
668 93.50 atmosphere 1015.0 90 < th dose dependent rect. 1 8
690 93.53 humidity 50.0 10 > th dose independent rect. 9 17
699 93.54 wind 9.0 90 < th dose dependent rect. 9 16
701 93.55 atmosphere 1015.0 270 < th dose independent rect. 19 6
709 93.55 radiation 40.0 30 < th dose dependent rect. 17 16
725 93.60 wind 1.0 90 > th dose independent rect. 1 8
730 93.60 radiation 20.0 90 < th dose dependent rect. 1 18
732 93.61 radiation 1.0 90 < th dose independent sin 1 NA
737 93.61 radiation 1.0 10 > th dose independent rect. 7 10
738 93.61 radiation 1.0 270 < th dose independent rect. 1 13
745 93.62 humidity 50.0 10 > th dose dependent rect. 2 7
746 93.62 humidity 50.0 270 > th dose dependent rect. 18 7
748 93.63 wind 1.0 270 > th dose independent rect. 1 18
773 93.67 radiation 20.0 90 < th dose independent rect. 12 21
787 93.69 atmosphere 995.0 270 > th dose independent rect. 15 15
791 93.69 radiation 20.0 10 < th dose independent rect. 2 20
815 93.72 radiation 40.0 270 < th dose independent rect. 15 15
822 93.73 wind 1.0 270 > th dose independent rect. 10 10
823 93.73 temperature 30.0 270 < th dose independent rect. 20 14
834 93.75 atmosphere 1000.0 270 > th dose independent rect. 20 14
838 93.76 precipitation 0.1 270 < th dose independent rect. 15 15
845 93.76 precipitation 0.1 270 < th dose dependent rect. 15 15
848 93.77 temperature 15.0 270 > th dose independent rect. 11 9
849 93.77 wind 7.0 270 < th dose independent rect. 20 14
864 93.79 wind 5.0 10 < th dose independent rect. 21 5
870 93.79 radiation 20.0 90 < th dose dependent rect. 1 20
877 93.80 radiation 20.0 10 < th dose independent rect. 12 21
886 93.82 temperature 30.0 270 < th dose independent rect. 6 19
898 93.84 precipitation 0.1 270 < th dose independent rect. 10 10
905 93.84 precipitation 0.1 270 < th dose dependent rect. 10 10
923 93.88 atmosphere 1015.0 270 < th dose independent rect. 10 10
924 93.88 temperature 10.0 270 > th dose independent rect. 20 14
925 93.88 humidity 50.0 270 > th dose independent rect. 20 14
930 93.88 wind 9.0 10 < th dose dependent rect. 9 17
932 93.89 wind 9.0 270 < th dose independent rect. 6 9
963 93.94 temperature 30.0 270 < th dose independent rect. 1 17
994 93.97 radiation 1.0 270 < th dose independent rect. 1 18
995 93.97 atmosphere 1015.0 270 < th dose independent rect. 6 19