Os04g0115700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0115700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 227.78 | 0.709 | 5.83 | 0.865 | 2.54 | 2.79 | 0.578 | -0.255 | 1.68 | 2.03 | 80 | 1444 | 20.8 | -- |
| 226.87 | 0.702 | 5.81 | 0.829 | 2.53 | 2.93 | 0.713 | -- | 1.72 | 2.04 | 81.32 | 1436 | 20.8 | -- |
| 227.8 | 0.703 | 5.83 | 0.845 | 2.52 | 2.94 | -- | -0.88 | 1.7 | 2.04 | 81 | 1435 | 21 | -- |
| 226.15 | 0.7 | 5.82 | 0.724 | 2.61 | 2.8 | -- | -- | 1.74 | 2.07 | 82 | 1428 | 20.3 | -- |
| 516.32 | 1.06 | 5.87 | 0.559 | -- | 1.77 | -- | -0.745 | 1.45 | -- | 84 | 1576 | 22.6 | -- |
| 322.72 | 0.842 | 5.9 | 0.514 | 2.52 | -- | 0.242 | -- | 1.37 | 2.02 | -- | -- | -- | -- |
| 322.94 | 0.842 | 5.9 | 0.507 | 2.52 | -- | -- | -- | 1.37 | 2.04 | -- | -- | -- | -- |
| 320.69 | 0.834 | 5.65 | 0.674 | -- | 3.71 | -- | -- | 1.68 | -- | 71.14 | 1857 | 7.83 | -- |
| 233.93 | 0.712 | 5.83 | -- | 2.62 | 3.07 | -- | -- | 1.67 | 2.1 | 83 | 1447 | 20.5 | -- |
| 703.95 | 1.24 | 5.88 | 0.611 | -- | -- | -- | -- | 1.43 | -- | -- | -- | -- | -- |
| 329.71 | 0.849 | 5.92 | -- | 2.53 | -- | -- | -- | 1.31 | 2.04 | -- | -- | -- | -- |
| 325.42 | 0.84 | 5.67 | -- | -- | 3.61 | -- | -- | 1.72 | -- | 72 | 1816 | 7.46 | -- |
| 713.81 | 1.25 | 5.89 | -- | -- | -- | -- | -- | 1.36 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 221.13 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 5 | 223.08 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 7 | 223.73 | humidity | 80 | 1440 | > th | dose dependent | rect. | 7 | 8 |
| 38 | 227.88 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 73 | 231.09 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 109 | 232.70 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 123 | 233.47 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 137 | 233.90 | humidity | 70 | 1440 | > th | dose dependent | sin | 2 | NA |
| 143 | 234.17 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 163 | 235.08 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 11 |
| 242 | 237.30 | humidity | 90 | 1440 | < th | dose dependent | sin | 4 | NA |
| 729 | 246.22 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 20 |
| 787 | 247.12 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 19 |
| 793 | 247.22 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 22 |