Os04g0115600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os04g0115600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 366.66 | 0.9 | 3.03 | 0.152 | 0.147 | 0.982 | 0.356 | 9.08 | -0.213 | 15.5 | 1.2 | 266 | 6.12 | 1.12 |
| 370.37 | 0.896 | 3.05 | -0.00841 | 0.157 | 3.1 | 0.152 | -- | -0.201 | 16.7 | 0.2907 | 263 | 6.17 | 1.09 |
| 367.04 | 0.892 | 3.03 | 0.155 | 0.147 | 0.984 | -- | 9.05 | -0.214 | 16 | 1.2 | 265 | 6.12 | 1.12 |
| 358.71 | 0.882 | 3 | 0.113 | 0.0663 | 3.35 | -- | -- | -0.0966 | 17.5 | 0.441 | 252 | 6.2 | 0.617 |
| 368.3 | 0.894 | 3.03 | 0.153 | -- | 0.968 | -- | 9.06 | -0.215 | -- | 1.2 | 265 | 6.12 | 1.12 |
| 422.29 | 0.963 | 3.05 | 0.165 | 0.189 | -- | 1.17 | -- | -0.246 | 9.95 | -- | -- | -- | -- |
| 427.12 | 0.968 | 3.05 | 0.215 | 0.2 | -- | -- | -- | -0.241 | 11.9 | -- | -- | -- | -- |
| 352.24 | 0.874 | 3.05 | 0.00821 | -- | 4.64 | -- | -- | -0.198 | -- | 0.3288 | 264 | 6.19 | 0.517 |
| 351.13 | 0.873 | 3.04 | -- | 0.156 | 4.71 | -- | -- | -0.145 | 17.9 | 0.437 | 229 | 6.18 | 0.617 |
| 429.64 | 0.969 | 3.06 | 0.209 | -- | -- | -- | -- | -0.244 | -- | -- | -- | -- | -- |
| 428.34 | 0.968 | 3.06 | -- | 0.197 | -- | -- | -- | -0.265 | 11.8 | -- | -- | -- | -- |
| 352.09 | 0.874 | 3.04 | -- | -- | 4.66 | -- | -- | -0.195 | -- | 0.435 | 229 | 6.18 | 0.6 |
| 430.79 | 0.969 | 3.06 | -- | -- | -- | -- | -- | -0.267 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 371.22 | wind | 1 | 270 | < th | dose independent | rect. | 6 | 1 |
| 2 | 371.56 | wind | 1 | 270 | < th | dose dependent | rect. | 6 | 1 |
| 8 | 382.53 | wind | 1 | 720 | < th | dose dependent | rect. | 2 | 5 |
| 18 | 387.31 | radiation | 20 | 90 | > th | dose dependent | rect. | 16 | 17 |
| 20 | 387.99 | temperature | 30 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 35 | 388.80 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 1 |
| 49 | 388.91 | radiation | 20 | 90 | > th | dose dependent | rect. | 6 | 3 |
| 123 | 392.49 | temperature | 30 | 90 | > th | dose independent | sin | 8 | NA |
| 141 | 392.72 | wind | 1 | 10 | < th | dose dependent | rect. | 7 | 2 |
| 162 | 393.23 | temperature | 30 | 90 | < th | dose independent | sin | 8 | NA |
| 165 | 393.46 | wind | 1 | 10 | < th | dose independent | rect. | 7 | 2 |
| 191 | 394.24 | wind | 1 | 270 | < th | dose dependent | rect. | 24 | 8 |
| 226 | 394.43 | wind | 1 | 720 | < th | dose dependent | rect. | 2 | 8 |
| 236 | 394.79 | wind | 1 | 270 | < th | dose independent | rect. | 24 | 8 |
| 268 | 395.47 | radiation | 30 | 90 | > th | dose independent | rect. | 7 | 2 |
| 305 | 395.66 | radiation | 10 | 90 | > th | dose dependent | sin | 11 | NA |
| 309 | 395.94 | wind | 1 | 720 | < th | dose dependent | rect. | 2 | 11 |
| 325 | 396.43 | wind | 1 | 270 | < th | dose dependent | rect. | 24 | 10 |
| 331 | 396.63 | wind | 1 | 270 | < th | dose independent | rect. | 24 | 10 |
| 339 | 396.87 | wind | 9 | 720 | < th | dose dependent | rect. | 22 | 10 |
| 343 | 396.99 | wind | 1 | 270 | > th | dose independent | rect. | 1 | 12 |
| 345 | 397.02 | temperature | 30 | 10 | > th | dose dependent | sin | 8 | NA |
| 350 | 397.11 | wind | 1 | 720 | < th | dose dependent | rect. | 2 | 21 |
| 384 | 397.53 | wind | 1 | 720 | > th | dose independent | rect. | 1 | 6 |
| 410 | 397.90 | wind | 1 | 720 | > th | dose independent | rect. | 4 | 8 |
| 414 | 397.96 | wind | 9 | 720 | < th | dose dependent | rect. | 21 | 12 |
| 419 | 398.02 | radiation | 40 | 90 | < th | dose dependent | sin | 11 | NA |
| 461 | 398.65 | temperature | 30 | 10 | > th | dose independent | rect. | 9 | 3 |
| 505 | 398.85 | wind | 3 | 720 | < th | dose dependent | rect. | 21 | 11 |
| 507 | 398.87 | wind | 7 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 547 | 398.95 | wind | 1 | 720 | > th | dose independent | rect. | 3 | 3 |
| 578 | 399.22 | wind | 1 | 720 | < th | dose dependent | rect. | 2 | 14 |
| 596 | 399.41 | temperature | 10 | 10 | > th | dose dependent | rect. | 7 | 14 |
| 599 | 399.44 | wind | 1 | 270 | < th | dose dependent | sin | 6 | NA |
| 604 | 399.49 | radiation | 20 | 90 | > th | dose independent | sin | 11 | NA |
| 663 | 399.89 | wind | 1 | 720 | > th | dose independent | rect. | 18 | 13 |
| 728 | 400.10 | radiation | 40 | 90 | > th | dose independent | sin | 11 | NA |
| 748 | 400.15 | wind | 1 | 720 | > th | dose independent | rect. | 4 | 1 |
| 779 | 400.24 | radiation | 20 | 90 | < th | dose independent | sin | 11 | NA |
| 852 | 400.57 | wind | 1 | 720 | > th | dose independent | rect. | 18 | 18 |
| 873 | 400.63 | temperature | 30 | 30 | < th | dose independent | rect. | 8 | 23 |
| 911 | 400.75 | radiation | 10 | 10 | > th | dose independent | sin | 10 | NA |
| 915 | 400.77 | radiation | 30 | 10 | > th | dose independent | sin | 11 | NA |
| 916 | 400.77 | radiation | 40 | 90 | < th | dose independent | sin | 11 | NA |
| 957 | 400.86 | radiation | 1 | 10 | > th | dose dependent | rect. | 17 | 17 |
| 967 | 400.95 | radiation | 10 | 10 | > th | dose independent | rect. | 17 | 17 |
| 971 | 400.98 | wind | 1 | 270 | < th | dose independent | sin | 6 | NA |