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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0113900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0118) R2 : 0.00132
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0192 (0.0248) R2dN8 : 0.0017 R2N8 : 0.00132
σ : 0.222
deviance : 22.58
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
20.3 0.212 2.96 -0.121 0.0601 5.37 0.0193 -20 0.0247 9.11 1.5 179 -- --
20.93 0.213 2.93 0.00701 0.0701 0.787 0.00469 -- 0.0368 10.1 1.764 246 -- --
20.3 0.21 2.97 -0.14 0.0602 5.4 -- -20 0.0244 9.18 1.418 256 -- --
20.81 0.212 2.93 8.46e-05 0.0645 0.834 -- -- 0.0262 9.27 1.5 255 -- --
20.5 0.211 2.97 -0.147 -- 5.3 -- -19.8 0.0247 -- 1.393 275 -- --
22.44 0.222 2.93 0.0198 0.046 -- -0.0238 -- 0.0213 9.97 -- -- -- --
22.44 0.222 2.93 0.0189 0.0461 -- -- -- 0.0213 10 -- -- -- --
21.05 0.214 2.94 -0.000131 -- 0.803 -- -- 0.0257 -- 1.5 247 -- --
20.81 0.212 2.93 -- 0.0645 0.834 -- -- 0.0258 9.2 1.5 255 -- --
22.57 0.222 2.94 0.0183 -- -- -- -- 0.0212 -- -- -- -- --
22.45 0.222 2.94 -- 0.046 -- -- -- 0.0192 10 -- -- -- --
21.05 0.214 2.94 -- -- 0.802 -- -- 0.0257 -- 1.5 247 -- --
22.58 0.222 2.94 -- -- -- -- -- 0.0192 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 18.10 temperature 20.0 10 < th dose dependent rect. 12 2
3 18.12 temperature 20.0 10 < th dose independent rect. 12 2
5 18.16 radiation 1.0 30 < th dose independent rect. 11 3
14 18.16 radiation 1.0 30 < th dose dependent rect. 11 3
23 18.17 radiation 1.0 10 < th dose independent rect. 13 1
33 18.17 radiation 1.0 10 < th dose dependent rect. 13 1
67 18.23 temperature 25.0 10 < th dose dependent rect. 14 1
119 19.35 temperature 20.0 270 < th dose independent rect. 10 4
127 19.36 temperature 20.0 10 < th dose independent rect. 12 8
137 19.45 temperature 20.0 270 < th dose dependent rect. 10 4
139 19.51 humidity 90.0 270 > th dose independent rect. 11 1
140 19.51 precipitation 0.1 270 > th dose independent rect. 10 1
145 19.51 temperature 20.0 270 < th dose dependent rect. 10 1
146 19.51 humidity 90.0 270 > th dose dependent rect. 11 1
147 19.51 precipitation 0.1 270 > th dose dependent rect. 10 1
150 19.52 temperature 20.0 270 < th dose independent rect. 10 1
166 19.59 humidity 80.0 10 > th dose independent rect. 12 2
186 19.81 atmosphere 1005.0 30 > th dose dependent rect. 13 1
204 20.18 precipitation 0.1 270 > th dose dependent rect. 10 9
216 20.26 atmosphere 1000.0 270 < th dose independent rect. 16 1
222 20.28 atmosphere 1000.0 270 < th dose dependent rect. 16 1
226 20.30 precipitation 0.1 270 > th dose independent rect. 16 1
227 20.30 precipitation 0.1 270 > th dose dependent rect. 16 1
228 20.30 precipitation 0.1 270 > th dose dependent rect. 16 3
230 20.31 humidity 60.0 10 > th dose dependent rect. 13 1
244 20.35 radiation 20.0 30 < th dose independent rect. 13 1
248 20.36 precipitation 0.1 270 > th dose independent rect. 16 3
264 20.42 temperature 30.0 30 < th dose dependent rect. 20 1
266 20.43 humidity 90.0 10 < th dose independent rect. 20 1
269 20.44 humidity 80.0 10 > th dose independent rect. 20 1
277 20.47 temperature 20.0 10 < th dose independent rect. 19 1
291 20.47 atmosphere 1010.0 30 < th dose dependent rect. 20 1
299 20.48 radiation 40.0 30 < th dose dependent rect. 12 2
316 20.52 atmosphere 1005.0 30 > th dose independent rect. 13 1
318 20.52 precipitation 0.1 270 > th dose independent rect. 10 8
324 20.53 wind 7.0 10 < th dose dependent rect. 20 1
331 20.54 temperature 15.0 720 < th dose independent rect. 2 1
337 20.54 temperature 15.0 720 < th dose dependent rect. 2 1
359 20.58 wind 5.0 10 < th dose independent rect. 20 1
375 20.60 humidity 50.0 10 > th dose dependent rect. 20 1
381 20.61 atmosphere 1000.0 10 > th dose independent rect. 20 1
392 20.62 temperature 20.0 10 > th dose independent sin 21 NA
393 20.62 wind 1.0 10 > th dose independent rect. 20 1
395 20.62 temperature 10.0 10 > th dose independent rect. 20 1
397 20.62 temperature 30.0 10 < th dose independent rect. 20 1
398 20.62 humidity 50.0 10 > th dose independent rect. 20 1
402 20.62 atmosphere 1010.0 10 < th dose independent rect. 20 1
405 20.62 radiation 1.0 10 < th dose independent rect. 20 1
410 20.62 precipitation 0.1 10 < th dose independent rect. 20 1
412 20.62 temperature 10.0 10 > th dose independent rect. 21 23
415 20.62 radiation 1.0 10 < th dose dependent rect. 20 1
420 20.62 precipitation 0.1 10 < th dose dependent rect. 20 1
450 20.66 temperature 20.0 10 < th dose independent sin 21 NA
499 20.71 wind 9.0 10 < th dose independent rect. 21 23
517 20.75 wind 7.0 10 < th dose independent rect. 13 1
520 20.75 temperature 10.0 10 > th dose dependent rect. 20 1
522 20.75 atmosphere 995.0 30 > th dose dependent rect. 20 1
550 20.80 atmosphere 1015.0 4320 > th dose independent rect. 15 1
553 20.80 wind 1.0 30 > th dose dependent rect. 20 1
555 20.80 atmosphere 1015.0 4320 > th dose dependent rect. 15 1
562 20.81 temperature 25.0 30 > th dose independent rect. 4 1
587 20.83 temperature 10.0 1440 > th dose independent rect. 21 1
590 20.83 temperature 30.0 1440 < th dose independent rect. 21 1
594 20.83 humidity 50.0 1440 > th dose independent rect. 21 1
600 20.83 atmosphere 995.0 1440 > th dose independent rect. 21 1
601 20.83 radiation 1.0 1440 < th dose independent rect. 21 1
625 20.83 temperature 10.0 1440 > th dose independent rect. 22 23
631 20.83 radiation 30.0 1440 < th dose dependent rect. 21 1
636 20.84 temperature 25.0 30 > th dose independent rect. 20 1
640 20.85 wind 3.0 10 > th dose independent rect. 13 1
671 20.89 precipitation 0.1 270 > th dose dependent sin 21 NA
672 20.89 humidity 90.0 30 < th dose dependent rect. 20 1
679 20.90 temperature 25.0 90 > th dose dependent rect. 4 1
717 20.94 humidity 70.0 270 > th dose independent rect. 10 4
738 20.96 humidity 60.0 270 > th dose dependent rect. 10 4
742 20.97 atmosphere 1015.0 4320 < th dose independent rect. 15 1
761 21.00 atmosphere 1015.0 4320 < th dose independent rect. 15 4
781 21.02 atmosphere 1000.0 10 > th dose independent rect. 14 23
787 21.03 wind 9.0 1440 < th dose independent rect. 21 1
803 21.05 humidity 90.0 30 < th dose independent rect. 13 1
817 21.06 temperature 20.0 10 > th dose independent rect. 8 12
823 21.07 humidity 90.0 10 < th dose independent rect. 4 1
827 21.07 wind 1.0 30 > th dose dependent rect. 4 1
882 21.11 wind 9.0 30 < th dose independent rect. 14 23
883 21.11 precipitation 0.1 30 < th dose independent rect. 14 23
884 21.11 wind 5.0 90 < th dose dependent rect. 12 1
896 21.11 precipitation 0.1 30 < th dose dependent rect. 14 23
900 21.12 temperature 10.0 10 > th dose independent rect. 13 1
904 21.12 temperature 10.0 1440 > th dose independent rect. 14 1
909 21.12 atmosphere 995.0 10 > th dose independent rect. 13 1
913 21.12 atmosphere 1010.0 10 < th dose independent rect. 13 1
917 21.12 precipitation 0.1 10 < th dose independent rect. 13 1
923 21.12 temperature 10.0 10 > th dose independent rect. 14 23
925 21.12 temperature 10.0 1440 > th dose independent rect. 15 23
928 21.12 precipitation 0.1 10 < th dose dependent rect. 13 1
942 21.14 humidity 70.0 90 > th dose independent rect. 12 17
961 21.16 wind 9.0 90 < th dose dependent rect. 12 2
975 21.17 temperature 10.0 30 > th dose dependent rect. 14 23
996 21.20 temperature 25.0 10 < th dose dependent rect. 12 8