Os04g0113800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os04g0113800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.02 | 0.274 | 13.2 | 0.367 | 0.464 | -2.14 | 0.382 | -0.322 | 0.125 | 21.6 | 30.37 | 252 | -- | -- |
| 34 | 0.272 | 13.2 | 0.334 | 0.52 | -2.12 | 0.351 | -- | 0.137 | 21.5 | 30.59 | 226 | -- | -- |
| 34.49 | 0.274 | 13.2 | 0.346 | 0.476 | -2.12 | -- | -0.254 | 0.131 | 21.5 | 30.42 | 243 | -- | -- |
| 34.5 | 0.274 | 13.2 | 0.303 | 0.504 | -2.14 | -- | -- | 0.121 | 21.5 | 30.63 | 225 | -- | -- |
| 41.61 | 0.3 | 13.2 | 0.344 | -- | -2.35 | -- | -0.457 | 0.0947 | -- | 30.6 | 391 | -- | -- |
| 92.37 | 0.451 | 13.1 | 0.832 | 0.897 | -- | 0.339 | -- | 0.519 | 18.4 | -- | -- | -- | -- |
| 92.65 | 0.451 | 13.1 | 0.827 | 0.898 | -- | -- | -- | 0.52 | 18.4 | -- | -- | -- | -- |
| 41.83 | 0.301 | 13.2 | 0.257 | -- | -2.36 | -- | -- | 0.0801 | -- | 30.81 | 387 | -- | -- |
| 36.65 | 0.282 | 13.2 | -- | 0.496 | -2.27 | -- | -- | 0.0649 | 21.9 | 30.6 | 224 | -- | -- |
| 134.57 | 0.542 | 13.1 | 0.804 | -- | -- | -- | -- | 0.501 | -- | -- | -- | -- | -- |
| 110.69 | 0.492 | 13.1 | -- | 0.887 | -- | -- | -- | 0.428 | 18.4 | -- | -- | -- | -- |
| 43.41 | 0.307 | 13.2 | -- | -- | -2.44 | -- | -- | 0.0344 | -- | 30.69 | 391 | -- | -- |
| 151.62 | 0.575 | 13.1 | -- | -- | -- | -- | -- | 0.412 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.86 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 3 | 32.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 5 | 32.69 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 30 | 34.29 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 32 | 34.34 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 75 | 36.28 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 117 | 37.85 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 190 | 39.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 224 | 39.76 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 18 |
| 248 | 39.91 | temperature | 20 | 90 | > th | dose dependent | rect. | 22 | 23 |
| 312 | 40.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 11 |
| 360 | 40.38 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 11 |
| 366 | 40.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 368 | 40.41 | temperature | 30 | 1440 | < th | dose dependent | sin | 6 | NA |
| 449 | 40.57 | temperature | 15 | 1440 | > th | dose dependent | sin | 8 | NA |
| 562 | 40.81 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 597 | 40.88 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 13 |
| 722 | 41.11 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 12 |