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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0112000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.35 (0.0269) R2 : 0.00637
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0969 (0.0567) R2dN8 : 0.00823 R2N8 : 0.00637
σ : 0.507
deviance : 118.05
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
110.37 0.494 3.35 0.147 0.275 -0.22 -0.464 -1.14 0.0871 6.13 70.39 4448 -- --
112.02 0.493 3.35 0.147 0.269 -0.218 -0.449 -- 0.0807 6.01 72 4246 -- --
110.58 0.49 3.35 0.17 0.29 -0.151 -- -1.31 0.0993 6.29 71 4939 -- --
112.39 0.494 3.34 0.135 0.268 -0.274 -- -- 0.0589 6.49 73 4249 -- --
114.46 0.498 3.36 0.162 -- -0.17 -- -1.29 0.0996 -- 69.02 5842 -- --
113.44 0.499 3.35 0.081 0.275 -- -0.48 -- 0.0984 6.08 -- -- -- --
113.98 0.5 3.34 0.0771 0.273 -- -- -- 0.1 6.39 -- -- -- --
115.93 0.501 3.36 0.087 -- -0.346 -- -- 0.0599 -- 73 4246 -- --
112.4 0.494 3.36 -- 0.284 -0.303 -- -- 0.053 6.44 72 4249 -- --
117.86 0.507 3.35 0.0841 -- -- -- -- 0.106 -- -- -- -- --
114.13 0.5 3.35 -- 0.274 -- -- -- 0.0919 6.38 -- -- -- --
116.14 0.502 3.37 -- -- -0.33 -- -- 0.048 -- 72 4249 -- --
118.05 0.507 3.35 -- -- -- -- -- 0.0969 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 99.25 radiation 10.0 30 > th dose independent rect. 6 2
15 103.85 humidity 80.0 10 < th dose independent rect. 6 2
31 104.22 temperature 25.0 90 < th dose independent rect. 6 1
34 104.41 humidity 80.0 10 < th dose independent rect. 23 9
41 104.98 temperature 25.0 10 > th dose independent rect. 7 1
55 106.00 radiation 40.0 43200 < th dose dependent rect. 23 1
56 106.02 temperature 25.0 30 > th dose independent rect. 20 12
59 106.17 wind 3.0 10 < th dose dependent rect. 6 2
61 106.26 radiation 10.0 30 > th dose independent sin 11 NA
63 106.41 radiation 10.0 4320 < th dose dependent rect. 23 1
72 106.78 wind 9.0 1440 < th dose independent rect. 23 1
73 106.78 temperature 10.0 1440 > th dose independent rect. 23 1
76 106.78 temperature 30.0 1440 < th dose independent rect. 23 1
80 106.78 humidity 50.0 1440 > th dose independent rect. 23 1
90 106.78 atmosphere 995.0 1440 > th dose independent rect. 23 1
91 106.78 radiation 1.0 1440 < th dose independent rect. 23 1
111 106.78 temperature 10.0 1440 > th dose independent rect. 24 23
120 106.80 temperature 25.0 30 > th dose independent rect. 22 1
121 106.85 humidity 80.0 30 > th dose independent rect. 22 1
122 106.92 temperature 20.0 30 > th dose dependent rect. 22 1
123 106.94 atmosphere 1005.0 30 > th dose dependent rect. 22 1
124 106.95 wind 3.0 30 < th dose independent rect. 22 1
130 107.03 atmosphere 1005.0 30 > th dose independent rect. 22 1
132 107.06 humidity 90.0 30 < th dose independent rect. 22 1
133 107.06 humidity 70.0 30 > th dose dependent rect. 22 1
134 107.07 wind 1.0 30 > th dose independent rect. 22 1
135 107.07 precipitation 0.1 30 < th dose independent rect. 22 1
137 107.07 precipitation 0.1 30 < th dose dependent rect. 22 1
141 107.09 wind 7.0 30 < th dose dependent rect. 22 1
146 107.11 temperature 10.0 30 > th dose independent rect. 22 1
148 107.11 temperature 30.0 30 < th dose independent rect. 22 1
149 107.11 humidity 50.0 30 > th dose independent rect. 22 1
153 107.11 atmosphere 1010.0 30 < th dose independent rect. 22 1
157 107.11 radiation 1.0 30 < th dose independent rect. 22 1
164 107.11 temperature 25.0 30 > th dose independent rect. 20 3
187 107.11 temperature 10.0 30 > th dose independent rect. 23 23
189 107.11 radiation 10.0 10 > th dose dependent rect. 6 1
191 107.11 radiation 1.0 30 < th dose dependent rect. 22 1
221 107.16 precipitation 0.1 720 < th dose independent rect. 19 8
223 107.16 precipitation 0.1 720 < th dose dependent rect. 19 8
224 107.19 atmosphere 995.0 720 > th dose independent rect. 7 8
226 107.24 wind 9.0 720 < th dose independent rect. 19 8
229 107.35 atmosphere 995.0 720 > th dose independent rect. 23 16
232 107.38 atmosphere 1015.0 30 < th dose dependent rect. 22 1
235 107.43 wind 1.0 30 > th dose dependent rect. 22 1
237 107.46 atmosphere 1000.0 30 > th dose independent rect. 8 22
239 107.50 precipitation 0.1 720 < th dose independent rect. 15 16
240 107.50 precipitation 0.1 720 < th dose dependent rect. 15 16
241 107.51 temperature 25.0 90 > th dose dependent rect. 20 3
242 107.54 precipitation 0.1 720 < th dose independent rect. 15 8
243 107.54 precipitation 0.1 720 < th dose dependent rect. 15 8
249 107.61 humidity 90.0 30 < th dose dependent rect. 22 1
250 107.62 atmosphere 995.0 720 > th dose independent rect. 3 16
258 107.68 temperature 30.0 30 < th dose dependent rect. 22 1
261 107.73 temperature 10.0 720 > th dose independent rect. 19 8
262 107.73 temperature 30.0 720 < th dose independent rect. 19 8
263 107.73 humidity 50.0 720 > th dose independent rect. 19 8
264 107.73 atmosphere 995.0 720 > th dose independent rect. 19 8
265 107.73 radiation 1.0 720 < th dose independent rect. 19 8
270 107.73 temperature 10.0 720 > th dose independent rect. 3 16
271 107.73 radiation 1.0 720 < th dose dependent rect. 19 8
278 107.80 temperature 10.0 720 > th dose independent rect. 7 8
279 107.80 atmosphere 1015.0 720 < th dose independent rect. 7 8
280 107.80 temperature 10.0 720 > th dose independent rect. 15 16
281 107.81 humidity 90.0 10 < th dose dependent rect. 6 2
285 107.84 humidity 90.0 10 < th dose dependent rect. 2 6
286 107.85 atmosphere 995.0 720 > th dose independent rect. 15 16
301 107.96 wind 3.0 30 < th dose independent rect. 6 2
305 108.00 atmosphere 1000.0 90 > th dose independent rect. 8 11
308 108.02 radiation 10.0 30 < th dose independent rect. 23 11
313 108.08 precipitation 0.1 720 < th dose independent rect. 11 16
314 108.08 precipitation 0.1 720 < th dose dependent rect. 11 16
315 108.10 wind 9.0 4320 < th dose independent rect. 7 2
318 108.11 temperature 25.0 720 > th dose dependent rect. 23 10
319 108.12 radiation 10.0 30 < th dose independent rect. 23 9
321 108.13 temperature 10.0 720 > th dose independent rect. 15 8
323 108.13 temperature 10.0 720 > th dose independent rect. 23 16
326 108.14 atmosphere 1005.0 30 > th dose independent rect. 6 2
335 108.20 atmosphere 1000.0 30 > th dose independent rect. 23 7
336 108.20 humidity 90.0 90 < th dose independent rect. 1 22
341 108.22 precipitation 0.1 720 < th dose independent rect. 7 8
343 108.22 precipitation 0.1 720 < th dose dependent rect. 7 8
344 108.23 atmosphere 1005.0 30 > th dose dependent rect. 2 6
347 108.25 humidity 50.0 720 > th dose independent rect. 3 8
348 108.26 temperature 25.0 720 > th dose independent rect. 20 1
355 108.30 wind 9.0 720 < th dose independent rect. 15 16
357 108.31 temperature 10.0 720 > th dose independent rect. 3 8
358 108.31 atmosphere 995.0 720 > th dose independent rect. 3 8
359 108.31 temperature 10.0 720 > th dose independent rect. 11 16
363 108.33 atmosphere 1005.0 30 > th dose dependent rect. 20 3
396 108.36 wind 9.0 30 < th dose independent rect. 23 23
405 108.37 wind 1.0 30 > th dose independent rect. 6 2
411 108.41 wind 1.0 90 > th dose independent rect. 8 11
413 108.42 wind 7.0 90 < th dose independent rect. 19 13
415 108.43 temperature 20.0 30 > th dose dependent rect. 20 12
417 108.45 precipitation 0.1 30 < th dose independent rect. 6 17
418 108.45 precipitation 0.1 30 < th dose dependent rect. 6 17
422 108.46 humidity 80.0 14400 < th dose dependent rect. 4 5
424 108.47 temperature 25.0 30 > th dose independent rect. 22 10
425 108.47 humidity 90.0 30 < th dose independent rect. 3 20
429 108.49 temperature 10.0 1440 > th dose independent rect. 24 7
432 108.49 temperature 30.0 1440 < th dose independent rect. 24 7
436 108.49 humidity 50.0 1440 > th dose independent rect. 24 7
441 108.49 atmosphere 995.0 1440 > th dose independent rect. 24 7
442 108.49 radiation 40.0 1440 < th dose independent rect. 24 7
446 108.49 temperature 10.0 1440 > th dose independent rect. 7 17
453 108.50 temperature 10.0 30 > th dose dependent rect. 23 7
454 108.51 temperature 30.0 90 < th dose dependent rect. 6 1
459 108.52 atmosphere 995.0 30 > th dose dependent rect. 6 2
465 108.56 temperature 10.0 1440 > th dose independent rect. 7 2
469 108.56 humidity 50.0 1440 > th dose independent rect. 7 2
471 108.56 atmosphere 995.0 1440 > th dose independent rect. 7 2
472 108.56 atmosphere 1015.0 1440 < th dose independent rect. 7 2
473 108.56 temperature 10.0 30 > th dose independent rect. 23 7
474 108.56 temperature 30.0 30 < th dose independent rect. 23 7
475 108.56 humidity 50.0 30 > th dose independent rect. 23 7
483 108.56 temperature 10.0 30 > th dose independent rect. 6 17
485 108.56 atmosphere 1015.0 30 < th dose independent rect. 6 17
486 108.56 temperature 10.0 1440 > th dose independent rect. 9 22
489 108.57 wind 9.0 30 < th dose independent rect. 23 7
492 108.58 radiation 10.0 30 < th dose independent sin 10 NA
510 108.61 precipitation 0.1 30 < th dose independent rect. 6 2
511 108.61 precipitation 0.1 30 < th dose dependent rect. 6 2
516 108.62 temperature 10.0 30 > th dose independent rect. 6 2
519 108.62 humidity 50.0 30 > th dose independent rect. 6 2
521 108.62 atmosphere 995.0 30 > th dose independent rect. 6 2
522 108.62 atmosphere 1015.0 30 < th dose independent rect. 6 2
524 108.62 temperature 10.0 30 > th dose independent rect. 8 22
526 108.62 temperature 20.0 10 > th dose dependent rect. 7 1
527 108.63 wind 9.0 720 < th dose independent rect. 3 8
531 108.64 precipitation 0.1 30 < th dose independent rect. 23 7
535 108.64 precipitation 0.1 30 < th dose dependent rect. 23 7
537 108.65 wind 9.0 30 < th dose independent rect. 8 22
545 108.68 precipitation 0.1 90 < th dose independent rect. 19 13
546 108.68 precipitation 0.1 90 < th dose dependent rect. 19 13
548 108.69 wind 1.0 30 > th dose independent rect. 6 17
553 108.70 wind 9.0 30 < th dose independent rect. 6 17
554 108.70 temperature 10.0 30 > th dose dependent rect. 6 2
570 108.71 atmosphere 995.0 30 > th dose dependent rect. 8 11
572 108.72 humidity 50.0 30 > th dose dependent rect. 23 7
573 108.73 radiation 40.0 30 < th dose independent rect. 6 2
577 108.74 humidity 70.0 14400 > th dose independent rect. 8 1
592 108.75 radiation 40.0 30 < th dose dependent rect. 23 7
596 108.77 precipitation 0.1 30 < th dose independent rect. 8 22
598 108.77 precipitation 0.1 30 < th dose dependent rect. 8 22
599 108.79 humidity 90.0 90 < th dose independent rect. 19 13
601 108.80 temperature 10.0 90 > th dose independent rect. 8 11
602 108.80 atmosphere 1015.0 90 < th dose independent rect. 8 11
603 108.80 temperature 10.0 90 > th dose independent rect. 19 13
604 108.80 temperature 30.0 90 < th dose independent rect. 19 13
605 108.80 humidity 50.0 90 > th dose independent rect. 19 13
607 108.80 atmosphere 995.0 90 > th dose independent rect. 19 13
609 108.80 atmosphere 995.0 720 > th dose dependent rect. 8 1
618 108.83 wind 7.0 720 < th dose independent rect. 20 1
621 108.83 atmosphere 1010.0 10 < th dose independent rect. 23 8
622 108.83 wind 9.0 90 < th dose independent rect. 8 11
624 108.83 temperature 25.0 720 > th dose dependent rect. 8 1
637 108.87 radiation 40.0 90 < th dose independent rect. 19 13
638 108.88 wind 9.0 30 < th dose dependent rect. 19 13
639 108.89 atmosphere 995.0 720 > th dose independent rect. 15 8
640 108.89 wind 1.0 90 > th dose independent rect. 19 13
647 108.90 humidity 50.0 30 > th dose independent rect. 8 22
648 108.90 atmosphere 1000.0 30 > th dose independent rect. 23 23
656 108.91 humidity 90.0 10 < th dose dependent rect. 20 12
658 108.92 humidity 70.0 14400 > th dose independent rect. 24 9
660 108.92 precipitation 0.1 90 < th dose independent rect. 8 11
662 108.92 precipitation 0.1 90 < th dose dependent rect. 8 11
663 108.93 humidity 70.0 14400 > th dose independent rect. 4 5
672 108.94 humidity 70.0 14400 > th dose independent rect. 6 3
675 108.94 atmosphere 995.0 720 > th dose independent rect. 11 16
680 108.95 wind 9.0 720 < th dose independent rect. 15 8
685 108.97 humidity 70.0 14400 < th dose independent rect. 8 1
688 108.97 atmosphere 995.0 30 > th dose dependent rect. 19 13
698 109.00 temperature 10.0 1440 > th dose independent rect. 9 11
701 109.00 temperature 10.0 1440 > th dose independent rect. 20 13
704 109.00 humidity 50.0 1440 > th dose independent rect. 20 13
706 109.00 atmosphere 995.0 1440 > th dose independent rect. 20 13
707 109.00 humidity 50.0 10 > th dose independent rect. 6 17
708 109.00 humidity 90.0 10 < th dose independent rect. 6 17
712 109.01 atmosphere 1015.0 90 < th dose independent rect. 19 13
713 109.01 radiation 10.0 30 < th dose dependent rect. 23 11
726 109.06 temperature 20.0 30 > th dose dependent rect. 2 6
756 109.12 humidity 50.0 90 > th dose independent rect. 8 11
762 109.13 temperature 25.0 720 > th dose independent rect. 8 1
765 109.13 atmosphere 1015.0 720 < th dose independent rect. 3 16
773 109.14 temperature 10.0 30 > th dose dependent rect. 20 12
776 109.15 radiation 1.0 720 < th dose dependent rect. 21 8
785 109.18 radiation 1.0 30 > th dose independent rect. 8 22
789 109.19 radiation 10.0 30 > th dose independent rect. 13 19
802 109.23 humidity 70.0 14400 < th dose independent rect. 6 3
833 109.25 radiation 20.0 90 < th dose independent rect. 6 2
858 109.28 precipitation 0.1 720 < th dose independent rect. 3 16
862 109.28 precipitation 0.1 720 < th dose dependent rect. 3 16
877 109.33 radiation 20.0 10 < th dose independent rect. 6 2
878 109.33 radiation 40.0 720 < th dose independent rect. 15 16
880 109.33 wind 1.0 10 > th dose independent rect. 8 22
881 109.33 atmosphere 1000.0 30 > th dose independent rect. 3 23
892 109.36 precipitation 0.1 4320 < th dose independent rect. 23 1
895 109.36 precipitation 0.1 4320 < th dose dependent rect. 23 1
900 109.37 atmosphere 1000.0 10 > th dose independent rect. 21 23
906 109.39 atmosphere 1015.0 720 < th dose independent rect. 20 1
909 109.39 atmosphere 1000.0 720 > th dose independent rect. 23 10
911 109.40 temperature 30.0 720 < th dose independent rect. 15 16
915 109.42 temperature 25.0 720 > th dose independent rect. 3 6
941 109.48 temperature 25.0 720 > th dose dependent rect. 20 1
951 109.50 wind 3.0 4320 > th dose independent rect. 5 2
953 109.50 atmosphere 1000.0 30 > th dose independent rect. 23 21
954 109.50 wind 9.0 720 < th dose dependent rect. 20 1
967 109.52 wind 3.0 4320 < th dose independent rect. 5 2
988 109.53 atmosphere 995.0 30 > th dose independent rect. 6 17