Os04g0111900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Resistance gene analog PIC22 (Fragment).
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Os04g0111900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Resistance gene analog PIC22 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.78 | 0.321 | 6.29 | 2.07 | 0.454 | -1.03 | -0.074 | 2.52 | 0.452 | 21.7 | 22.39 | 809 | -- | -- |
| 52.66 | 0.338 | 6.33 | 1.77 | 0.394 | -0.871 | 0.158 | -- | 0.386 | 21.4 | 22.62 | 871 | -- | -- |
| 46.79 | 0.319 | 6.29 | 2.05 | 0.462 | -1.04 | -- | 2.46 | 0.447 | 21.5 | 22.36 | 784 | -- | -- |
| 50.21 | 0.332 | 6.34 | 1.52 | 0.284 | -1.25 | -- | -- | 0.328 | 16.2 | 12.85 | 710 | -- | -- |
| 52.01 | 0.336 | 6.27 | 2.15 | -- | -0.748 | -- | 2.1 | 0.467 | -- | 21.9 | 1549 | -- | -- |
| 65.36 | 0.379 | 6.38 | 1.28 | 0.177 | -- | 0.123 | -- | 0.152 | 22.7 | -- | -- | -- | -- |
| 65.42 | 0.379 | 6.38 | 1.28 | 0.176 | -- | -- | -- | 0.151 | 22.9 | -- | -- | -- | -- |
| 53.44 | 0.342 | 6.34 | 1.46 | -- | -0.981 | -- | -- | 0.283 | -- | 7.667 | 1563 | -- | -- |
| 105.02 | 0.48 | 6.4 | -- | 0.138 | -0.467 | -- | -- | 0.0774 | 19.3 | 19.91 | 30 | -- | -- |
| 67.33 | 0.383 | 6.37 | 1.28 | -- | -- | -- | -- | 0.152 | -- | -- | -- | -- | -- |
| 108.54 | 0.487 | 6.41 | -- | 0.187 | -- | -- | -- | 0.00875 | 23.3 | -- | -- | -- | -- |
| 106.01 | 0.481 | 6.39 | -- | -- | -0.451 | -- | -- | 0.0721 | -- | 19.7 | 4 | -- | -- |
| 110.74 | 0.491 | 6.41 | -- | -- | -- | -- | -- | 0.0101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.32 | temperature | 20 | 720 | > th | dose dependent | rect. | 10 | 18 |
| 19 | 46.69 | temperature | 20 | 720 | > th | dose dependent | sin | 18 | NA |
| 32 | 46.93 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 19 |
| 34 | 46.96 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 16 |
| 35 | 46.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 18 |
| 70 | 47.35 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 103 | 47.66 | wind | 5 | 43200 | > th | dose dependent | rect. | 7 | 14 |
| 104 | 47.66 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 115 | 47.69 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 123 | 47.74 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 16 |
| 127 | 47.75 | wind | 5 | 43200 | > th | dose dependent | sin | 22 | NA |
| 136 | 47.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 157 | 47.82 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 207 | 47.91 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 17 |
| 228 | 47.93 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 251 | 47.98 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 21 |
| 252 | 47.99 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 22 |
| 253 | 47.99 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 22 |
| 258 | 48.00 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 19 |
| 279 | 48.03 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 19 |
| 301 | 48.06 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 19 |
| 310 | 48.07 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 312 | 48.07 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 19 |
| 331 | 48.09 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 22 |
| 344 | 48.11 | wind | 7 | 43200 | > th | dose independent | rect. | 4 | 17 |
| 358 | 48.12 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 15 |
| 363 | 48.12 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 22 |
| 380 | 48.15 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 14 |
| 435 | 48.18 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 21 |
| 450 | 48.19 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 452 | 48.19 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 461 | 48.20 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 13 |
| 469 | 48.20 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 22 |
| 470 | 48.20 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 23 |
| 483 | 48.21 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 492 | 48.22 | wind | 5 | 43200 | > th | dose independent | sin | 23 | NA |
| 493 | 48.22 | wind | 5 | 43200 | > th | dose independent | rect. | 7 | 10 |
| 501 | 48.22 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 502 | 48.22 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 508 | 48.23 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 517 | 48.23 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 19 |
| 535 | 48.24 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 537 | 48.24 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 555 | 48.24 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 589 | 48.26 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 18 |
| 606 | 48.27 | wind | 5 | 43200 | < th | dose independent | rect. | 7 | 10 |
| 617 | 48.27 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 623 | 48.28 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 671 | 48.29 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 694 | 48.31 | wind | 5 | 43200 | < th | dose independent | sin | 0 | NA |
| 716 | 48.32 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 15 |
| 782 | 48.35 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 837 | 48.38 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 879 | 48.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 881 | 48.40 | wind | 7 | 43200 | > th | dose independent | sin | 2 | NA |