Os04g0109100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Concanavalin A-like lectin/glucanase domain containing protein.
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Os04g0109100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Concanavalin A-like lectin/glucanase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69.82 | 0.393 | 11.4 | 0.21 | 0.852 | -0.575 | 0.0378 | -0.131 | -0.445 | 7.33 | 2.39 | 9 | -- | -- |
| 68.67 | 0.389 | 11.4 | 0.2 | 0.84 | -0.572 | 0.167 | -- | -0.446 | 7.4 | 2.39 | 8 | -- | -- |
| 68.6 | 0.389 | 11.4 | 0.205 | 0.838 | -0.578 | -- | -0.151 | -0.446 | 7.37 | 2.39 | 9 | -- | -- |
| 68.75 | 0.389 | 11.4 | 0.203 | 0.838 | -0.576 | -- | -- | -0.447 | 7.38 | 2.39 | 8 | -- | -- |
| 99.14 | 0.466 | 11.4 | 0.213 | -- | -0.826 | -- | -0.138 | -0.439 | -- | 2.39 | 9 | -- | -- |
| 76.74 | 0.411 | 11.4 | 0.229 | 1.3 | -- | 0.203 | -- | -0.424 | 9.2 | -- | -- | -- | -- |
| 76.89 | 0.411 | 11.4 | 0.236 | 1.3 | -- | -- | -- | -0.424 | 9.2 | -- | -- | -- | -- |
| 99.27 | 0.466 | 11.4 | 0.211 | -- | -0.825 | -- | -- | -0.44 | -- | 2.39 | 9 | -- | -- |
| 69.84 | 0.391 | 11.4 | -- | 0.834 | -0.588 | -- | -- | -0.47 | 7.31 | 2.39 | 8 | -- | -- |
| 174.34 | 0.617 | 11.4 | 0.231 | -- | -- | -- | -- | -0.418 | -- | -- | -- | -- | -- |
| 78.36 | 0.414 | 11.4 | -- | 1.3 | -- | -- | -- | -0.45 | 9.19 | -- | -- | -- | -- |
| 100.44 | 0.468 | 11.4 | -- | -- | -0.827 | -- | -- | -0.463 | -- | 2.39 | 8 | -- | -- |
| 175.76 | 0.619 | 11.4 | -- | -- | -- | -- | -- | -0.443 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.27 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 5 | 55.38 | radiation | 1.0 | 10 | > th | dose independent | sin | 9 | NA |
| 6 | 55.44 | radiation | 1.0 | 10 | < th | dose independent | sin | 9 | NA |
| 7 | 55.81 | radiation | 1.0 | 10 | < th | dose independent | rect. | 23 | 15 |
| 11 | 55.84 | temperature | 20.0 | 10 | > th | dose independent | rect. | 23 | 6 |
| 12 | 55.85 | radiation | 1.0 | 30 | < th | dose dependent | sin | 9 | NA |
| 17 | 56.18 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 23 | 15 |
| 19 | 56.21 | humidity | 80.0 | 10 | > th | dose independent | rect. | 23 | 6 |
| 25 | 56.35 | radiation | 1.0 | 10 | < th | dose independent | rect. | 23 | 13 |
| 31 | 56.54 | radiation | 1.0 | 10 | < th | dose independent | rect. | 23 | 9 |
| 35 | 56.54 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 36 | 56.70 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 21 | 8 |
| 37 | 56.73 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 23 | 13 |
| 44 | 56.88 | wind | 9.0 | 10 | < th | dose independent | rect. | 23 | 6 |
| 45 | 56.88 | temperature | 10.0 | 10 | > th | dose independent | rect. | 23 | 6 |
| 46 | 56.88 | temperature | 30.0 | 10 | < th | dose independent | rect. | 23 | 6 |
| 47 | 56.88 | humidity | 50.0 | 10 | > th | dose independent | rect. | 23 | 6 |
| 50 | 56.88 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 23 | 6 |
| 51 | 56.88 | radiation | 1.0 | 10 | < th | dose independent | rect. | 23 | 6 |
| 56 | 56.88 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 18 |
| 58 | 56.88 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 18 |
| 59 | 56.88 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 23 | 6 |
| 66 | 56.92 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 23 | 9 |
| 97 | 57.19 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 18 |
| 98 | 57.19 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 18 |
| 100 | 57.39 | wind | 9.0 | 10 | < th | dose independent | rect. | 5 | 18 |
| 104 | 57.50 | radiation | 1.0 | 10 | < th | dose independent | rect. | 21 | 17 |
| 108 | 57.62 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 23 | 6 |
| 136 | 57.88 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 21 | 17 |
| 141 | 57.96 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 21 | 8 |
| 146 | 58.06 | wind | 5.0 | 10 | < th | dose dependent | rect. | 5 | 6 |
| 152 | 58.14 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 18 |
| 156 | 58.20 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 23 | 6 |
| 157 | 58.20 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 23 | 6 |
| 161 | 58.30 | radiation | 1.0 | 10 | < th | dose independent | rect. | 21 | 11 |
| 165 | 58.30 | wind | 9.0 | 10 | < th | dose dependent | rect. | 23 | 6 |
| 191 | 58.66 | temperature | 10.0 | 10 | > th | dose independent | rect. | 21 | 8 |
| 192 | 58.66 | temperature | 30.0 | 10 | < th | dose independent | rect. | 21 | 8 |
| 193 | 58.66 | humidity | 50.0 | 10 | > th | dose independent | rect. | 21 | 8 |
| 196 | 58.66 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 21 | 8 |
| 202 | 58.66 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 16 |
| 204 | 58.66 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 16 |
| 205 | 58.66 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 21 | 8 |
| 210 | 58.69 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 21 | 11 |
| 214 | 58.71 | wind | 9.0 | 10 | < th | dose independent | rect. | 21 | 8 |
| 227 | 58.79 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 16 |
| 230 | 58.79 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 16 |
| 274 | 59.00 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 295 | 59.26 | wind | 9.0 | 10 | < th | dose independent | rect. | 5 | 16 |
| 296 | 59.27 | wind | 5.0 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 347 | 59.63 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 2 |
| 356 | 59.69 | wind | 3.0 | 10 | < th | dose independent | rect. | 5 | 6 |
| 364 | 59.81 | wind | 9.0 | 90 | < th | dose dependent | rect. | 4 | 7 |
| 366 | 59.82 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 16 |
| 369 | 59.85 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 21 | 8 |
| 370 | 59.85 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 21 | 8 |
| 376 | 59.89 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 16 |
| 447 | 60.31 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 466 | 60.40 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 11 | 18 |
| 477 | 60.48 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 2 |
| 485 | 60.56 | wind | 5.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 491 | 60.59 | wind | 9.0 | 10 | < th | dose dependent | rect. | 5 | 18 |
| 506 | 60.77 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 3 |
| 508 | 60.77 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 514 | 60.82 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 7 |
| 517 | 60.85 | wind | 9.0 | 10 | < th | dose independent | rect. | 8 | 21 |
| 524 | 60.93 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 526 | 60.93 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 527 | 60.93 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 529 | 60.93 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 530 | 60.93 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 531 | 60.93 | temperature | 10.0 | 10 | > th | dose independent | rect. | 8 | 21 |
| 557 | 61.00 | temperature | 20.0 | 10 | > th | dose independent | rect. | 8 | 21 |
| 581 | 61.05 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 7 |
| 584 | 61.05 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 7 |
| 585 | 61.07 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 588 | 61.09 | temperature | 15.0 | 90 | > th | dose independent | rect. | 11 | 17 |
| 593 | 61.12 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 5 | 6 |
| 616 | 61.17 | temperature | 10.0 | 90 | > th | dose independent | rect. | 4 | 7 |
| 617 | 61.17 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 4 | 7 |
| 618 | 61.17 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 4 | 7 |
| 624 | 61.20 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 11 | 17 |
| 629 | 61.23 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 644 | 61.28 | wind | 9.0 | 90 | < th | dose independent | rect. | 11 | 17 |
| 649 | 61.30 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 23 | 6 |
| 672 | 61.38 | humidity | 50.0 | 90 | > th | dose independent | rect. | 4 | 7 |
| 674 | 61.39 | temperature | 20.0 | 10 | > th | dose independent | rect. | 11 | 18 |
| 679 | 61.42 | wind | 9.0 | 90 | < th | dose independent | rect. | 4 | 7 |
| 706 | 61.47 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 11 | 17 |
| 707 | 61.47 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 708 | 61.47 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 11 | 17 |
| 718 | 61.54 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 6 |
| 723 | 61.56 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 12 | 17 |
| 733 | 61.61 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 8 | 21 |
| 734 | 61.61 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 8 | 21 |
| 735 | 61.62 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 23 | 2 |
| 746 | 61.67 | humidity | 80.0 | 270 | > th | dose independent | rect. | 23 | 2 |
| 750 | 61.69 | wind | 9.0 | 10 | < th | dose dependent | rect. | 5 | 16 |
| 752 | 61.70 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 18 |
| 753 | 61.71 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 7 |
| 754 | 61.71 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 7 |
| 757 | 61.73 | wind | 9.0 | 10 | < th | dose independent | rect. | 11 | 18 |
| 760 | 61.76 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 2 |
| 762 | 61.76 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 2 |
| 773 | 61.82 | wind | 7.0 | 270 | < th | dose independent | rect. | 23 | 2 |
| 775 | 61.82 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 2 |
| 776 | 61.82 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 2 |
| 777 | 61.82 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 2 |
| 780 | 61.82 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 2 |
| 781 | 61.82 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 2 |
| 786 | 61.82 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 8 | 21 |
| 787 | 61.82 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 22 |
| 789 | 61.82 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 2 |
| 809 | 61.85 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 812 | 61.86 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 6 |
| 813 | 61.86 | wind | 9.0 | 270 | < th | dose dependent | rect. | 23 | 2 |
| 814 | 61.86 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 6 |
| 818 | 61.88 | wind | 5.0 | 270 | < th | dose dependent | rect. | 4 | 2 |
| 826 | 61.92 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 1 |
| 841 | 61.93 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 22 |
| 842 | 61.93 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 845 | 61.94 | temperature | 15.0 | 270 | > th | dose independent | rect. | 22 | 15 |
| 856 | 61.98 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 6 |
| 858 | 61.98 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 6 |
| 859 | 61.98 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 6 |
| 860 | 61.98 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 6 |
| 861 | 61.98 | temperature | 10.0 | 10 | > th | dose independent | rect. | 11 | 18 |
| 872 | 62.04 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 8 | 21 |
| 883 | 62.06 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 24 | 5 |
| 886 | 62.06 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 24 | 5 |
| 890 | 62.06 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 24 | 5 |
| 899 | 62.06 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 24 | 5 |
| 900 | 62.06 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 24 | 5 |
| 912 | 62.06 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 11 | 18 |
| 913 | 62.06 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 19 |
| 950 | 62.11 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 17 |
| 954 | 62.11 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 17 |