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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0107700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase C1A, papain family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.13 (0.015) R2 : 0.00971
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0666 (0.0315) R2dN8 : 0.0125 R2N8 : 0.00971
σ : 0.282
deviance : 36.42
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.87 0.273 3.14 0.141 0.108 0.201 0.0135 0.861 -0.0849 7.4 88.1 5903 -- --
34.91 0.275 3.13 0.0972 0.108 0.234 0.000258 -- -0.106 7.24 92 5875 -- --
33.87 0.271 3.14 0.144 0.109 0.204 -- 0.854 -0.0852 7.32 88.74 5903 -- --
34.86 0.275 3.13 0.0926 0.136 0.248 -- -- -0.114 7.09 95 4847 -- --
34.49 0.274 3.14 0.143 -- 0.201 -- 0.85 -0.0836 -- 88.15 5851 -- --
35.64 0.28 3.12 0.0786 0.107 -- 6.28e-05 -- -0.0595 7.29 -- -- -- --
35.64 0.28 3.12 0.0786 0.107 -- -- -- -0.0595 7.29 -- -- -- --
35.51 0.278 3.14 0.0944 -- 0.233 -- -- -0.108 -- 91.95 5751 -- --
35.08 0.276 3.14 -- 0.141 0.234 -- -- -0.125 7.05 97.01 4850 -- --
36.25 0.281 3.13 0.0805 -- -- -- -- -0.0577 -- -- -- -- --
35.8 0.28 3.13 -- 0.108 -- -- -- -0.0682 7.25 -- -- -- --
35.75 0.278 3.14 -- -- 0.219 -- -- -0.11 -- 91 5739 -- --
36.42 0.282 3.13 -- -- -- -- -- -0.0666 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.53 atmosphere 1005.0 90 > th dose dependent rect. 2 1
2 32.70 atmosphere 1005.0 10 > th dose dependent rect. 2 2
3 32.72 radiation 1.0 43200 < th dose dependent rect. 3 1
6 32.94 temperature 20.0 30 > th dose dependent rect. 2 1
7 32.95 temperature 20.0 30 > th dose independent rect. 2 1
10 32.98 atmosphere 1000.0 30 > th dose independent rect. 2 1
17 33.00 wind 3.0 30 < th dose independent rect. 2 1
20 33.00 atmosphere 1000.0 30 > th dose independent rect. 3 23
23 33.01 temperature 10.0 30 > th dose independent rect. 2 1
25 33.01 temperature 30.0 30 < th dose independent rect. 2 1
26 33.01 humidity 50.0 30 > th dose independent rect. 2 1
30 33.01 atmosphere 1010.0 30 < th dose independent rect. 2 1
32 33.01 radiation 1.0 30 < th dose independent rect. 2 1
37 33.01 precipitation 0.1 30 < th dose independent rect. 2 1
38 33.01 temperature 10.0 30 > th dose independent rect. 3 23
39 33.01 wind 5.0 30 < th dose dependent rect. 2 1
42 33.01 humidity 50.0 30 > th dose dependent rect. 2 1
45 33.01 radiation 1.0 30 < th dose dependent rect. 2 1
50 33.01 precipitation 0.1 30 < th dose dependent rect. 2 1
62 33.05 wind 9.0 1440 < th dose independent rect. 3 1
63 33.05 temperature 10.0 1440 > th dose independent rect. 3 1
66 33.05 temperature 30.0 1440 < th dose independent rect. 3 1
70 33.05 humidity 50.0 1440 > th dose independent rect. 3 1
79 33.05 atmosphere 995.0 1440 > th dose independent rect. 3 1
80 33.05 radiation 1.0 1440 < th dose independent rect. 3 1
100 33.05 temperature 10.0 1440 > th dose independent rect. 4 23
115 33.07 wind 1.0 30 > th dose independent rect. 2 1
116 33.07 atmosphere 1015.0 30 < th dose dependent rect. 2 1
121 33.11 temperature 30.0 30 < th dose dependent rect. 2 1
124 33.14 temperature 25.0 90 > th dose dependent rect. 1 3
152 33.26 precipitation 0.1 30 < th dose independent rect. 3 23
156 33.26 precipitation 0.1 30 < th dose dependent rect. 3 23
191 33.37 humidity 80.0 14400 < th dose dependent rect. 7 2
199 33.42 humidity 70.0 14400 > th dose independent rect. 6 3
209 33.43 humidity 70.0 14400 > th dose independent rect. 8 1
218 33.47 wind 1.0 14400 < th dose dependent rect. 6 1
219 33.49 humidity 70.0 14400 < th dose independent rect. 8 1
222 33.51 wind 9.0 30 < th dose independent rect. 3 23
230 33.55 humidity 70.0 14400 < th dose independent rect. 6 3
231 33.55 temperature 25.0 270 > th dose independent rect. 23 4
274 33.63 humidity 50.0 30 > th dose independent rect. 3 23
275 33.64 wind 1.0 14400 < th dose independent rect. 6 1
276 33.64 humidity 90.0 90 < th dose independent rect. 2 1
284 33.78 humidity 60.0 14400 < th dose dependent rect. 12 1
288 33.81 wind 1.0 14400 > th dose independent rect. 6 1
291 33.83 temperature 25.0 270 > th dose dependent rect. 23 4
297 33.86 humidity 90.0 90 < th dose independent rect. 2 3
310 33.87 humidity 50.0 4320 > th dose independent rect. 14 1
314 33.87 temperature 25.0 270 > th dose independent rect. 20 7
327 33.88 wind 1.0 14400 < th dose dependent rect. 4 4
328 33.88 wind 1.0 14400 < th dose dependent rect. 4 7
337 33.90 wind 1.0 14400 < th dose independent rect. 4 7
344 33.91 wind 1.0 14400 < th dose independent rect. 4 4
352 33.92 wind 1.0 14400 > th dose independent rect. 4 4
370 33.94 wind 1.0 14400 > th dose independent rect. 4 7
380 33.95 humidity 70.0 4320 > th dose dependent rect. 3 8
423 33.98 humidity 60.0 4320 > th dose independent rect. 11 1
445 33.99 humidity 60.0 4320 < th dose independent rect. 11 1
446 33.99 temperature 30.0 10 < th dose independent rect. 3 23
451 33.99 humidity 50.0 4320 > th dose dependent rect. 2 10
457 34.00 humidity 60.0 14400 < th dose dependent sin 4 NA
496 34.01 humidity 90.0 4320 < th dose dependent rect. 23 14
508 34.02 wind 1.0 30 < th dose independent rect. 23 4
513 34.02 wind 3.0 30 < th dose dependent rect. 2 3
539 34.03 humidity 90.0 4320 < th dose dependent rect. 3 10
550 34.04 wind 1.0 30 < th dose independent rect. 21 6
555 34.04 humidity 50.0 4320 > th dose dependent sin 5 NA
557 34.04 humidity 90.0 4320 < th dose dependent sin 5 NA
623 34.05 wind 1.0 14400 < th dose dependent rect. 2 9
643 34.06 humidity 60.0 4320 < th dose independent rect. 10 3
644 34.06 humidity 80.0 4320 < th dose independent rect. 4 9
677 34.07 humidity 60.0 4320 > th dose independent rect. 10 3
679 34.07 humidity 90.0 4320 < th dose independent rect. 3 7
687 34.07 humidity 50.0 14400 > th dose dependent rect. 8 1
733 34.08 humidity 50.0 4320 > th dose dependent rect. 11 1
737 34.08 wind 3.0 30 < th dose dependent rect. 22 5
746 34.08 humidity 80.0 4320 < th dose dependent rect. 7 8
850 34.10 humidity 70.0 4320 < th dose independent rect. 8 5
959 34.11 humidity 50.0 14400 > th dose independent rect. 13 19
962 34.11 humidity 60.0 14400 < th dose dependent no NA NA