Os04g0105700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0105700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.76 | 0.341 | 14 | 0.911 | 1.5 | 0.835 | 0.0522 | 1.55 | -0.00539 | 22 | 41.7 | 362 | -- | -- |
| 53.59 | 0.341 | 14 | 0.82 | 1.44 | 0.879 | -0.138 | -- | -0.058 | 22.2 | 40.45 | 452 | -- | -- |
| 52.62 | 0.338 | 14 | 0.895 | 1.5 | 0.838 | -- | 1.47 | -0.0122 | 22 | 41.19 | 376 | -- | -- |
| 53.65 | 0.341 | 14 | 0.823 | 1.44 | 0.87 | -- | -- | -0.0504 | 22.2 | 40.45 | 453 | -- | -- |
| 139.64 | 0.55 | 13.9 | 1.16 | -- | 0.969 | -- | 1.88 | 0.0178 | -- | 41.18 | 930 | -- | -- |
| 65.65 | 0.38 | 14 | 0.902 | 1.52 | -- | 0.0377 | -- | 0.0572 | 21.2 | -- | -- | -- | -- |
| 65.66 | 0.379 | 14 | 0.901 | 1.52 | -- | -- | -- | 0.0572 | 21.2 | -- | -- | -- | -- |
| 114.14 | 0.498 | 13.9 | 0.659 | -- | 1.48 | -- | -- | -0.0652 | -- | 10.02 | 952 | -- | -- |
| 71.46 | 0.394 | 14 | -- | 1.39 | 0.954 | -- | -- | -0.128 | 22.4 | 40.07 | 473 | -- | -- |
| 199.87 | 0.661 | 13.9 | 0.905 | -- | -- | -- | -- | 0.0492 | -- | -- | -- | -- | -- |
| 87.04 | 0.436 | 14 | -- | 1.52 | -- | -- | -- | -0.0431 | 21.2 | -- | -- | -- | -- |
| 98.27 | 0.462 | 14 | -- | -- | 1.94 | -- | -- | -0.191 | -- | 1.56 | 1070 | -- | -- |
| 221.48 | 0.695 | 13.9 | -- | -- | -- | -- | -- | -0.0512 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.93 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 8 |
| 3 | 50.11 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 8 |
| 8 | 50.74 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 9 |
| 35 | 51.92 | temperature | 20 | 30 | > th | dose independent | rect. | 6 | 6 |
| 40 | 51.97 | temperature | 25 | 270 | > th | dose dependent | sin | 0 | NA |
| 50 | 52.16 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 64 | 52.29 | temperature | 25 | 90 | > th | dose dependent | rect. | 10 | 19 |
| 138 | 52.92 | humidity | 90 | 30 | < th | dose independent | rect. | 6 | 8 |
| 150 | 52.97 | temperature | 25 | 90 | > th | dose dependent | sin | 20 | NA |
| 173 | 53.11 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 22 |
| 235 | 53.48 | humidity | 90 | 30 | < th | dose independent | rect. | 6 | 6 |
| 266 | 53.67 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 278 | 53.77 | temperature | 25 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 284 | 53.82 | radiation | 40 | 270 | < th | dose independent | rect. | 16 | 23 |
| 294 | 53.85 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 9 |
| 319 | 53.95 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 18 |
| 323 | 54.01 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 16 |
| 385 | 54.21 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 407 | 54.24 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 18 |
| 420 | 54.27 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 19 |
| 460 | 54.38 | humidity | 90 | 30 | < th | dose independent | rect. | 4 | 10 |
| 482 | 54.47 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 10 |
| 487 | 54.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 496 | 54.51 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 3 |
| 540 | 54.68 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 5 |
| 552 | 54.70 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 16 |
| 607 | 54.86 | temperature | 10 | 10 | > th | dose dependent | rect. | 12 | 18 |
| 617 | 54.91 | radiation | 40 | 270 | < th | dose independent | rect. | 5 | 18 |
| 632 | 54.97 | temperature | 30 | 270 | < th | dose dependent | sin | 22 | NA |
| 638 | 54.98 | radiation | 40 | 270 | > th | dose independent | rect. | 12 | 23 |
| 646 | 54.99 | radiation | 40 | 270 | < th | dose dependent | rect. | 4 | 21 |
| 651 | 55.00 | radiation | 40 | 270 | < th | dose dependent | rect. | 5 | 18 |
| 655 | 55.01 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 682 | 55.09 | radiation | 40 | 270 | > th | dose independent | sin | 18 | NA |
| 691 | 55.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 14 |
| 701 | 55.13 | radiation | 30 | 270 | > th | dose dependent | sin | 18 | NA |
| 716 | 55.18 | temperature | 30 | 10 | < th | dose independent | rect. | 6 | 8 |
| 759 | 55.28 | radiation | 30 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 761 | 55.29 | humidity | 90 | 90 | > th | dose independent | rect. | 1 | 15 |
| 770 | 55.31 | radiation | 40 | 270 | < th | dose independent | sin | 17 | NA |
| 783 | 55.33 | wind | 7 | 30 | < th | dose independent | rect. | 12 | 18 |
| 805 | 55.37 | radiation | 1 | 270 | < th | dose dependent | rect. | 22 | 13 |
| 860 | 55.47 | temperature | 25 | 270 | > th | dose independent | sin | 22 | NA |
| 873 | 55.50 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 5 |
| 893 | 55.54 | temperature | 25 | 10 | > th | dose independent | rect. | 10 | 10 |
| 899 | 55.56 | temperature | 10 | 43200 | > th | dose independent | rect. | 13 | 7 |
| 903 | 55.56 | radiation | 30 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 904 | 55.57 | radiation | 40 | 270 | > th | dose independent | rect. | 10 | 5 |
| 927 | 55.58 | radiation | 30 | 270 | > th | dose dependent | rect. | 10 | 6 |
| 953 | 55.61 | humidity | 90 | 90 | > th | dose independent | rect. | 1 | 11 |
| 955 | 55.61 | wind | 7 | 30 | < th | dose independent | rect. | 14 | 16 |
| 959 | 55.62 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 3 |
| 973 | 55.64 | temperature | 20 | 90 | < th | dose independent | rect. | 1 | 12 |