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Os04g0105200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.33 (0.0726) R2 : 0.546
β1 : -7.19 (0.412) R2dD : 1.42 R2D : 0.0435
β2 : 0.598 (0.137) R2dC : 0.0192 R2C : -0.112
β3 : 1.06 (0.153) R2dE : 0.121 R2E : -0.294
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.74 (0.841) R2dD*E : 0.3 R2D*E : -0.853
γ1 : -1.95 (0.212) R2dN8 : 0.395 R2N8 : -0.31
σ : 0.991
deviance : 452.6
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C
peak time of C : 4.56
E
wheather : temperature
threshold : 25.19
memory length : 1402
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 21.4
open length of G : 0.896

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
452.09 0.999 7.33 -7.19 0.59 1.06 0.475 -6.76 -1.94 4.37 25.2 1400 21.4 0.885
502.08 1.04 7 -5.61 0.57 1.49 0.538 -- -0.878 4.56 17.58 47520 20.5 0.518
452.6 0.991 7.33 -7.19 0.598 1.06 -- -6.74 -1.95 4.56 25.19 1402 21.4 0.896
502.48 1.04 7.01 -5.63 0.553 1.53 -- -- -0.909 4.7 17.6 47520 20.6 0.218
471.21 1.01 7.33 -7.15 -- 1.09 -- -6.8 -1.91 -- 25.14 1399 21.4 0.934
522.32 1.07 6.91 -4.18 0.567 -- 0.512 -- -0.468 4.36 -- -- -- --
522.98 1.07 6.91 -4.18 0.573 -- -- -- -0.471 4.57 -- -- -- --
518.65 1.06 7.01 -5.64 -- 1.59 -- -- -0.908 -- 17.6 47520 20.6 0.217
984.07 1.47 6.81 -- 0.488 -0.184 -- -- 0.00915 4.69 -6.514 47520 20.3 0.689
540.48 1.09 6.92 -4.16 -- -- -- -- -0.456 -- -- -- -- --
984.31 1.47 6.81 -- 0.496 -- -- -- -0.00514 4.78 -- -- -- --
698.95 1.23 6.59 -- -- -2.58 -- -- 0.772 -- 19.1 47520 20.7 0.667
997.33 1.47 6.81 -- -- -- -- -- 0.00568 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 425.78 temperature 25.0 43200 < th dose independent rect. 6 1
2 425.80 temperature 25.0 43200 > th dose independent rect. 6 1
5 426.87 temperature 30.0 43200 > th dose dependent rect. 15 23
6 426.91 temperature 30.0 43200 > th dose dependent rect. 11 23
7 426.92 temperature 30.0 43200 > th dose dependent rect. 11 7
27 426.93 temperature 30.0 43200 > th dose dependent no NA NA
162 426.94 temperature 30.0 43200 > th dose dependent sin 19 NA
166 426.94 temperature 30.0 43200 > th dose dependent rect. 13 23
238 427.09 temperature 30.0 43200 > th dose dependent rect. 13 1
305 427.32 temperature 25.0 43200 > th dose dependent rect. 6 2
307 427.33 temperature 30.0 43200 > th dose dependent rect. 15 1
308 427.35 temperature 30.0 43200 > th dose independent rect. 17 19
310 427.37 temperature 30.0 43200 > th dose dependent sin 10 NA
329 427.41 temperature 30.0 43200 > th dose independent sin 10 NA
335 427.44 temperature 30.0 43200 < th dose independent sin 10 NA
342 427.51 temperature 30.0 43200 < th dose independent rect. 17 19
344 427.52 precipitation 0.1 43200 > th dose dependent rect. 2 3
421 427.87 temperature 25.0 43200 > th dose dependent rect. 1 8
425 427.89 temperature 30.0 43200 > th dose independent rect. 8 4
444 427.93 temperature 30.0 43200 < th dose independent rect. 17 1
462 428.11 temperature 30.0 43200 < th dose independent rect. 24 12
463 428.11 temperature 30.0 43200 < th dose independent rect. 21 15
470 428.13 temperature 30.0 43200 < th dose independent rect. 8 4
485 428.14 temperature 30.0 43200 < th dose independent rect. 3 9
488 428.15 temperature 30.0 43200 < th dose independent rect. 5 7
502 428.26 temperature 30.0 43200 < th dose independent rect. 10 2
509 428.38 temperature 30.0 43200 < th dose independent rect. 16 14
511 428.39 temperature 30.0 43200 > th dose independent rect. 17 1
512 428.39 temperature 30.0 43200 < th dose independent rect. 16 12
519 428.40 temperature 30.0 43200 < th dose independent rect. 16 9
534 428.42 temperature 30.0 43200 > th dose independent rect. 16 3
548 428.43 temperature 30.0 43200 < th dose independent rect. 16 3
549 428.43 temperature 30.0 43200 < th dose independent rect. 16 6
670 428.96 radiation 1.0 43200 > th dose independent rect. 5 1
700 429.10 temperature 30.0 43200 > th dose independent no NA NA
709 429.10 temperature 30.0 43200 > th dose independent rect. 8 11
832 429.17 radiation 1.0 43200 < th dose independent rect. 5 1
881 429.31 temperature 30.0 43200 < th dose independent rect. 8 22
885 429.32 temperature 30.0 43200 < th dose independent no NA NA
887 429.32 temperature 30.0 43200 < th dose independent rect. 8 11
888 429.32 temperature 30.0 43200 < th dose independent rect. 8 14
890 429.32 temperature 30.0 43200 < th dose independent rect. 2 17
891 429.32 temperature 30.0 43200 < th dose independent rect. 8 17
896 429.32 temperature 30.0 43200 < th dose independent rect. 24 19
902 429.32 temperature 30.0 43200 < th dose independent rect. 2 21