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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0104900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 0-methyltransferase (EC 2.1.1.6) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.24 (0.0537) R2 : 0.316
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.07 (0.14) R2dC : 0.0869 R2C : 0.0833
β3 : 1.74 (0.153) R2dE : 0.198 R2E : 0.162
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.628 (0.114) R2dN8 : 0.0601 R2N8 : 0.0235
σ : 1.01
deviance : 466.95
__
_____
C
peak time of C : 6.43
E
wheather : radiation
threshold : 50
memory length : 1232
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 6.87
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
463.68 1.01 4.24 0.214 1.05 1.83 1.08 1.87 0.593 6.35 49.17 1241 6.9 --
465.07 1 4.24 -0.0145 1.06 1.78 1.44 -- 0.632 6.14 49.99 1240 6.96 --
466.28 1.01 4.23 0.0774 1.07 1.69 -- 0.946 0.629 6.53 50 1240 6.9 --
466.94 1.01 4.24 0.012 1.07 1.74 -- -- 0.628 6.43 50 1232 6.87 --
523.51 1.07 4.25 0.138 -- 1.7 -- 1.14 0.66 -- 50 1251 6.91 --
590.25 1.14 4.28 0.0573 1.15 -- 1.34 -- 0.464 5.4 -- -- -- --
594.64 1.14 4.28 0.0611 1.16 -- -- -- 0.458 5.48 -- -- -- --
525.14 1.07 4.24 0.0412 -- 1.8 -- -- 0.662 -- 50 1242 6.91 --
466.95 1.01 4.24 -- 1.07 1.74 -- -- 0.628 6.43 50 1232 6.87 --
664.63 1.2 4.29 0.0997 -- -- -- -- 0.487 -- -- -- -- --
594.74 1.14 4.28 -- 1.16 -- -- -- 0.452 5.47 -- -- -- --
525.11 1.07 4.25 -- -- 1.8 -- -- 0.653 -- 50 1242 6.93 --
664.89 1.2 4.3 -- -- -- -- -- 0.476 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 458.23 wind 5.0 30 < th dose dependent rect. 3 6
5 464.10 temperature 15.0 30 > th dose dependent rect. 3 6
10 466.15 humidity 50.0 90 > th dose dependent rect. 17 10
12 467.05 humidity 80.0 720 < th dose dependent rect. 18 2
24 471.09 humidity 80.0 720 < th dose independent rect. 19 1
26 471.35 wind 3.0 30 < th dose independent rect. 3 6
30 472.78 radiation 1.0 270 < th dose dependent rect. 5 21
31 472.92 radiation 1.0 14400 < th dose dependent rect. 23 6
37 473.31 wind 5.0 90 < th dose dependent rect. 3 4
47 475.08 temperature 15.0 270 > th dose dependent rect. 3 2
48 475.31 radiation 30.0 90 < th dose independent rect. 3 6
49 475.32 wind 3.0 90 < th dose independent rect. 3 4
55 475.96 temperature 15.0 90 > th dose dependent rect. 3 4
57 476.07 precipitation 0.1 90 < th dose independent rect. 3 6
58 476.07 precipitation 0.1 90 < th dose dependent rect. 3 6
59 476.24 precipitation 0.1 10 < th dose independent rect. 3 6
60 476.24 precipitation 0.1 10 < th dose dependent rect. 3 6
62 476.63 humidity 80.0 90 > th dose independent rect. 19 8
64 476.78 wind 5.0 30 < th dose dependent rect. 3 8
67 476.99 temperature 30.0 720 < th dose independent rect. 17 10
72 477.17 temperature 10.0 270 > th dose dependent rect. 1 6
93 479.97 radiation 1.0 1440 < th dose dependent rect. 18 10
99 480.22 radiation 40.0 90 < th dose dependent rect. 3 6
102 480.46 temperature 30.0 90 < th dose independent rect. 3 6
107 480.75 precipitation 0.1 270 < th dose independent rect. 3 2
108 480.75 precipitation 0.1 270 < th dose dependent rect. 3 2
112 481.04 wind 3.0 43200 < th dose independent rect. 3 1
117 481.19 humidity 60.0 90 > th dose independent rect. 3 6
121 481.35 radiation 10.0 1440 > th dose independent rect. 17 13
127 481.63 temperature 10.0 90 > th dose independent rect. 3 6
130 481.63 atmosphere 995.0 90 > th dose independent rect. 3 6
131 481.63 atmosphere 1015.0 90 < th dose independent rect. 3 6
132 481.63 temperature 10.0 90 > th dose independent rect. 9 18
133 481.65 radiation 1.0 270 < th dose independent rect. 5 21
134 481.77 wind 5.0 270 < th dose independent rect. 1 6
135 481.80 radiation 1.0 1440 < th dose dependent rect. 18 1
146 482.28 temperature 30.0 720 > th dose independent rect. 18 1
167 482.60 wind 3.0 43200 > th dose independent rect. 3 1
169 482.67 radiation 30.0 1440 < th dose dependent rect. 18 10
173 482.74 radiation 10.0 1440 > th dose independent rect. 17 1
185 482.74 radiation 1.0 1440 < th dose dependent rect. 18 4
186 482.75 precipitation 0.1 90 < th dose independent rect. 3 4
187 482.75 precipitation 0.1 90 < th dose dependent rect. 3 4
190 482.83 humidity 50.0 90 > th dose dependent rect. 3 6
192 482.88 wind 9.0 90 < th dose independent rect. 9 18
203 483.28 wind 5.0 270 < th dose independent rect. 3 2
204 483.30 temperature 30.0 720 > th dose dependent rect. 18 1
221 483.36 wind 7.0 270 < th dose dependent rect. 3 2
225 483.46 precipitation 0.1 90 < th dose independent rect. 3 17
226 483.46 precipitation 0.1 90 < th dose dependent rect. 3 17
227 483.49 wind 3.0 43200 < th dose dependent rect. 3 1
230 483.60 temperature 30.0 14400 > th dose independent rect. 15 3
231 483.66 radiation 1.0 14400 < th dose dependent rect. 18 4
233 483.68 radiation 1.0 14400 < th dose dependent rect. 18 1
237 483.78 wind 7.0 43200 < th dose independent rect. 10 2
238 483.79 radiation 1.0 14400 > th dose independent rect. 18 1
250 483.89 radiation 1.0 14400 < th dose independent rect. 18 10
251 483.91 temperature 30.0 14400 < th dose independent rect. 15 3
264 484.00 wind 3.0 43200 > th dose dependent rect. 11 1
266 484.11 temperature 30.0 720 < th dose independent rect. 17 2
272 484.20 wind 7.0 43200 > th dose independent rect. 10 2
273 484.21 radiation 1.0 14400 < th dose independent rect. 18 1
284 484.37 radiation 1.0 14400 < th dose independent rect. 18 4
287 484.48 temperature 30.0 14400 > th dose independent rect. 17 1
290 484.52 radiation 20.0 1440 < th dose dependent rect. 17 13
314 484.94 temperature 30.0 14400 < th dose independent rect. 15 13
326 485.07 radiation 40.0 1440 > th dose independent rect. 14 1
373 485.31 wind 7.0 270 < th dose dependent rect. 1 6
376 485.40 radiation 40.0 1440 > th dose dependent rect. 13 20
383 485.67 wind 1.0 43200 > th dose dependent rect. 3 1
388 485.82 humidity 70.0 720 > th dose independent rect. 18 9
401 485.89 humidity 70.0 720 < th dose independent rect. 18 13
421 485.97 radiation 40.0 1440 > th dose dependent rect. 13 2
422 486.04 temperature 30.0 14400 < th dose independent rect. 17 1
423 486.04 precipitation 0.1 270 < th dose independent rect. 1 6
424 486.04 precipitation 0.1 270 < th dose dependent rect. 1 6
459 486.36 temperature 15.0 90 > th dose independent rect. 3 17
487 486.88 radiation 1.0 1440 > th dose dependent rect. 17 13
492 487.03 temperature 30.0 14400 < th dose independent sin 14 NA
499 487.17 temperature 30.0 14400 > th dose independent sin 14 NA
501 487.25 temperature 25.0 14400 > th dose dependent rect. 15 1
502 487.26 wind 9.0 90 < th dose dependent rect. 19 8
504 487.29 temperature 30.0 14400 > th dose independent rect. 12 6
515 487.57 humidity 70.0 14400 < th dose independent rect. 18 1
522 487.68 atmosphere 995.0 90 > th dose independent rect. 3 17
526 487.73 temperature 30.0 14400 < th dose independent rect. 12 6
548 487.94 wind 5.0 90 < th dose independent rect. 19 8
567 488.01 temperature 30.0 14400 < th dose independent rect. 12 16
573 488.04 temperature 30.0 14400 < th dose independent rect. 12 13
646 488.35 radiation 40.0 1440 < th dose independent rect. 14 1
654 488.40 humidity 70.0 90 > th dose independent rect. 3 4
656 488.43 temperature 10.0 90 > th dose independent rect. 3 4
658 488.43 temperature 30.0 90 < th dose independent rect. 3 4
659 488.43 humidity 50.0 90 > th dose independent rect. 3 4
661 488.43 atmosphere 995.0 90 > th dose independent rect. 3 4
662 488.43 atmosphere 1015.0 90 < th dose independent rect. 3 4
663 488.43 radiation 30.0 90 < th dose independent rect. 3 4
665 488.43 temperature 10.0 90 > th dose independent rect. 7 20
668 488.46 radiation 40.0 14400 > th dose dependent rect. 14 19
679 488.59 temperature 20.0 270 > th dose independent rect. 3 2
709 488.73 precipitation 0.1 270 < th dose independent rect. 13 17
710 488.73 precipitation 0.1 270 < th dose dependent rect. 13 17
718 488.85 temperature 25.0 14400 > th dose dependent rect. 14 16
727 488.97 humidity 50.0 90 > th dose dependent rect. 3 4
749 489.09 radiation 1.0 1440 > th dose dependent rect. 17 1
751 489.11 precipitation 0.1 30 < th dose independent rect. 9 18
753 489.11 precipitation 0.1 30 < th dose dependent rect. 9 18
767 489.26 wind 9.0 90 < th dose independent rect. 7 20
792 489.42 radiation 20.0 1440 < th dose dependent rect. 17 2
832 489.66 temperature 25.0 14400 > th dose dependent rect. 23 1
833 489.66 radiation 20.0 14400 > th dose dependent rect. 16 15
862 489.96 temperature 30.0 14400 > th dose independent rect. 12 1
913 490.10 radiation 30.0 30 < th dose independent rect. 3 8
916 490.11 wind 7.0 43200 < th dose independent rect. 5 8
920 490.16 temperature 30.0 14400 < th dose independent rect. 12 1
929 490.23 temperature 25.0 270 < th dose independent rect. 1 5
932 490.27 temperature 25.0 14400 > th dose dependent rect. 2 2
959 490.38 wind 9.0 90 < th dose independent rect. 3 17
970 490.41 radiation 20.0 1440 < th dose dependent rect. 17 5