Os04g0103800 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0103800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.94	(0.037)	R²	:	0.104
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	3.91	(0.532)	R²_dE	:	0.106	R²_E	:	0.105
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.0428	(0.078)	R²_dN8	:	-0.000699	R²_N8	:	-0.00182
σ	:	0.695
deviance	:	222.99
__

_____

C
peak time of C	:	--
E
wheather	:	wind
threshold	:	0.699
memory length	:	69
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	14.7
open length of G	:	6.23

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
208.66	0.679	2.98	0.109	0.0516	9.3	0.639	-34.8	0.0178	14.3	0.6624	100	13.9	7.14
238.42	0.719	2.88	0.5	0.0781	7.38	-0.0265	--	0.162	0.487	0.7	72	14.2	6.92
209.19	0.674	2.98	0.129	0.0612	9.41	--	-35.6	0.013	14.2	0.6154	96	13.8	7.14
222.81	0.695	2.91	0.357	0.00924	4.62	--	--	0.153	20.4	0.701	68	14.8	6.2
209.26	0.674	2.98	0.123	--	9.94	--	-38.5	0.0182	--	0.6036	99	13.8	7.12
245.4	0.734	2.96	0.252	0.167	--	-0.288	--	-0.0109	19.2	--	--	--	--
245.56	0.734	2.96	0.26	0.171	--	--	--	-0.0109	18.5	--	--	--	--
222.31	0.694	2.91	0.37	--	4.33	--	--	0.147	--	0.7032	67	14.9	6.19
223.02	0.696	2.94	--	0.18	3.91	--	--	0.0589	18.5	0.6998	70	14.7	6.18
247.09	0.735	2.95	0.255	--	--	--	--	-0.0144	--	--	--	--	--
247.34	0.736	2.96	--	0.168	--	--	--	-0.0398	18.6	--	--	--	--
222.99	0.695	2.94	--	--	3.91	--	--	0.0428	--	0.699	69	14.7	6.23
248.81	0.736	2.96	--	--	--	--	--	-0.0427	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	215.06	wind	1e+00	90	< th	dose dependent	rect.	14	7
6	220.03	wind	1e+00	90	< th	dose independent	rect.	14	8
15	223.48	humidity	6e+01	10	< th	dose dependent	rect.	15	1
16	223.49	atmosphere	1e+03	10	< th	dose dependent	rect.	13	7
22	223.60	atmosphere	1e+03	10	< th	dose dependent	rect.	13	5
39	223.89	humidity	6e+01	10	< th	dose independent	rect.	15	1
42	223.93	atmosphere	1e+03	30	< th	dose independent	rect.	13	7
47	223.98	atmosphere	1e+03	30	< th	dose independent	rect.	13	5
60	224.04	atmosphere	1e+03	270	< th	dose independent	rect.	12	1
63	224.06	atmosphere	1e+03	270	< th	dose dependent	rect.	12	1
85	224.29	radiation	4e+01	90	> th	dose independent	rect.	15	1
102	224.29	radiation	4e+01	90	> th	dose dependent	rect.	15	1
120	224.32	wind	1e+00	30	< th	dose independent	rect.	4	1
122	224.38	radiation	2e+01	90	> th	dose dependent	rect.	15	1
138	224.42	wind	1e+00	30	< th	dose dependent	rect.	4	1
159	224.73	radiation	2e+01	10	> th	dose independent	rect.	16	1
191	224.85	precipitation	1e-01	10	> th	dose independent	rect.	3	1
195	224.85	precipitation	1e-01	10	> th	dose dependent	rect.	3	1
386	226.16	wind	1e+00	90	< th	dose dependent	rect.	15	1
573	227.57	wind	3e+00	10	< th	dose independent	rect.	16	1
602	227.88	wind	1e+00	90	< th	dose dependent	rect.	17	4
609	228.05	wind	1e+00	90	< th	dose dependent	rect.	20	1
614	228.09	atmosphere	1e+03	90	< th	dose dependent	sin	21	NA
622	228.33	atmosphere	1e+03	90	< th	dose dependent	rect.	24	21
624	228.36	atmosphere	1e+03	90	< th	dose dependent	rect.	24	16
626	228.39	atmosphere	1e+03	90	< th	dose dependent	rect.	24	19
634	228.52	atmosphere	1e+03	10	< th	dose independent	rect.	19	3
639	228.52	atmosphere	1e+03	90	< th	dose dependent	rect.	19	3
640	228.53	wind	3e+00	10	< th	dose dependent	rect.	16	1
642	228.53	atmosphere	1e+03	10	< th	dose dependent	rect.	19	3
667	228.57	atmosphere	1e+03	90	< th	dose dependent	rect.	9	12
701	228.63	atmosphere	1e+03	90	< th	dose dependent	rect.	9	7
905	229.46	atmosphere	1e+03	90	< th	dose dependent	rect.	12	14
972	229.63	humidity	6e+01	90	< th	dose independent	sin	13	NA