Os04g0103200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Proteasome component region PCI domain containing protein.
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Os04g0103200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Proteasome component region PCI domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 95.12 | 0.458 | 10.3 | -0.535 | 0.586 | 0.818 | 0.644 | 0.0617 | -0.391 | 14.8 | 20.4 | 1136 | -- | -- |
| 95.13 | 0.454 | 10.3 | -0.544 | 0.583 | 0.811 | 0.633 | -- | -0.391 | 14.8 | 20.4 | 1134 | -- | -- |
| 96.36 | 0.457 | 10.3 | -0.548 | 0.588 | 0.814 | -- | -0.0667 | -0.392 | 14.5 | 20.42 | 1096 | -- | -- |
| 96.37 | 0.457 | 10.3 | -0.533 | 0.591 | 0.822 | -- | -- | -0.391 | 14.5 | 20.46 | 1083 | -- | -- |
| 114.59 | 0.499 | 10.3 | -0.615 | -- | 0.789 | -- | -0.288 | -0.409 | -- | 20.4 | 1598 | -- | -- |
| 111 | 0.494 | 10.2 | -0.219 | 0.516 | -- | 0.892 | -- | -0.213 | 15.3 | -- | -- | -- | -- |
| 113.29 | 0.498 | 10.2 | -0.202 | 0.518 | -- | -- | -- | -0.208 | 14.9 | -- | -- | -- | -- |
| 114.73 | 0.499 | 10.3 | -0.567 | -- | 0.841 | -- | -- | -0.403 | -- | 20.27 | 1598 | -- | -- |
| 102.67 | 0.472 | 10.3 | -- | 0.581 | 0.623 | -- | -- | -0.297 | 14.6 | 20.5 | 1069 | -- | -- |
| 128.75 | 0.53 | 10.2 | -0.224 | -- | -- | -- | -- | -0.222 | -- | -- | -- | -- | -- |
| 114.37 | 0.5 | 10.2 | -- | 0.521 | -- | -- | -- | -0.186 | 14.9 | -- | -- | -- | -- |
| 120.88 | 0.512 | 10.2 | -- | -- | 0.502 | -- | -- | -0.283 | -- | 20.5 | 365 | -- | -- |
| 130.08 | 0.532 | 10.2 | -- | -- | -- | -- | -- | -0.197 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 91.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 5 |
| 2 | 91.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 3 |
| 6 | 91.74 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 3 |
| 7 | 91.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 5 |
| 16 | 91.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 19 | 92.00 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 36 | 92.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 39 | 92.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 56 | 92.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 89 | 93.02 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 123 | 93.40 | temperature | 25 | 90 | > th | dose dependent | sin | 3 | NA |
| 127 | 93.44 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 150 | 93.62 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 164 | 93.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 200 | 93.99 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 218 | 94.09 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 18 |
| 302 | 94.58 | temperature | 30 | 90 | < th | dose independent | sin | 4 | NA |
| 318 | 94.62 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 363 | 94.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 364 | 94.85 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 420 | 95.06 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 437 | 95.12 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 480 | 95.29 | temperature | 30 | 270 | < th | dose independent | sin | 7 | NA |
| 537 | 95.51 | temperature | 30 | 90 | > th | dose independent | sin | 4 | NA |
| 574 | 95.62 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 596 | 95.71 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 619 | 95.77 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 620 | 95.77 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 698 | 95.98 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 749 | 96.13 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 757 | 96.14 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 7 |
| 815 | 96.24 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 828 | 96.28 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 892 | 96.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 897 | 96.49 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 902 | 96.51 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 973 | 96.68 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 14 |