Os04g0102500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phosphoglycerate mutase-like protein.
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Os04g0102500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phosphoglycerate mutase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.9 | 0.318 | 10.8 | -1.11 | 0.711 | 0.829 | 0.204 | 1.61 | -0.549 | 18.3 | 23.89 | 696 | -- | -- |
| 48.21 | 0.323 | 10.7 | -0.801 | 0.674 | 0.615 | -0.00813 | -- | -0.472 | 18.2 | 25.48 | 2151 | -- | -- |
| 45.99 | 0.316 | 10.8 | -1.1 | 0.707 | 0.824 | -- | 1.55 | -0.546 | 18.4 | 23.9 | 725 | -- | -- |
| 48.2 | 0.323 | 10.7 | -0.808 | 0.679 | 0.614 | -- | -- | -0.471 | 18.2 | 25.4 | 2142 | -- | -- |
| 68.18 | 0.385 | 10.8 | -1.09 | -- | 0.837 | -- | 1.35 | -0.528 | -- | 25.22 | 1285 | -- | -- |
| 54.7 | 0.347 | 10.8 | -1.04 | 0.664 | -- | 0.000123 | -- | -0.621 | 17.9 | -- | -- | -- | -- |
| 54.7 | 0.346 | 10.8 | -1.04 | 0.664 | -- | -- | -- | -0.621 | 17.9 | -- | -- | -- | -- |
| 69.5 | 0.388 | 10.7 | -0.799 | -- | 0.673 | -- | -- | -0.47 | -- | 25.9 | 2751 | -- | -- |
| 44.11 | 0.309 | 10.7 | -- | 0.657 | 1.01 | -- | -- | -0.204 | 18.1 | 35.38 | 47520 | -- | -- |
| 77.58 | 0.412 | 10.8 | -1.06 | -- | -- | -- | -- | -0.636 | -- | -- | -- | -- | -- |
| 83.23 | 0.427 | 10.7 | -- | 0.68 | -- | -- | -- | -0.505 | 17.9 | -- | -- | -- | -- |
| 66.48 | 0.38 | 10.7 | -- | -- | 1.03 | -- | -- | -0.211 | -- | 48.54 | 47520 | -- | -- |
| 107.23 | 0.483 | 10.7 | -- | -- | -- | -- | -- | -0.518 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.84 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 9 |
| 3 | 37.99 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 10 | 38.32 | wind | 1 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 34 | 38.68 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 6 |
| 53 | 38.87 | wind | 1 | 14400 | < th | dose dependent | sin | 9 | NA |
| 57 | 38.89 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 61 | 38.94 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 90 | 39.18 | wind | 1 | 14400 | < th | dose independent | sin | 9 | NA |
| 93 | 39.19 | wind | 1 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 107 | 39.29 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 116 | 39.35 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 7 |
| 126 | 39.39 | wind | 1 | 14400 | > th | dose independent | sin | 9 | NA |
| 138 | 39.45 | wind | 1 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 160 | 39.57 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 218 | 39.87 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 6 |
| 299 | 40.15 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 407 | 40.48 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 6 |
| 446 | 40.57 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 452 | 40.58 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 23 |
| 474 | 40.64 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 11 |
| 490 | 40.68 | wind | 1 | 14400 | > th | dose independent | rect. | 12 | 21 |
| 491 | 40.68 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 504 | 40.70 | humidity | 80 | 14400 | > th | dose dependent | rect. | 2 | 4 |
| 517 | 40.73 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 23 |
| 526 | 40.76 | wind | 1 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 547 | 40.79 | wind | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 564 | 40.84 | wind | 1 | 14400 | > th | dose independent | no | NA | NA |
| 588 | 40.89 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 599 | 40.91 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 20 |
| 621 | 40.97 | wind | 1 | 14400 | < th | dose independent | no | NA | NA |
| 625 | 40.98 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 21 |
| 650 | 41.03 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 23 |
| 698 | 41.14 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 13 |
| 748 | 41.22 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 11 |
| 761 | 41.25 | humidity | 80 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 825 | 41.36 | humidity | 50 | 14400 | > th | dose dependent | rect. | 2 | 4 |
| 831 | 41.37 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 11 |
| 967 | 41.62 | humidity | 50 | 14400 | > th | dose dependent | rect. | 2 | 1 |