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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0101400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.43 (0.0467) R2 : 0.373
β1 : -1.55 (0.175) R2dD : 0.119 R2D : 0.0668
β2 : 0.705 (0.116) R2dC : 0.057 R2C : -0.0237
β3 : 2.03 (0.162) R2dE : 0.27 R2E : 0.152
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.356 (0.103) R2dN8 : 0.0238 R2N8 : 0.0677
σ : 0.866
deviance : 345.91
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_____
C
peak time of C : 12.1
E
wheather : temperature
threshold : 21.72
memory length : 1055
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 9.5
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
331.9 0.856 8.56 -2.64 0.664 2.4 -1.44 -4.58 0.0373 13 22.26 1076 8.91 --
343.03 0.863 8.44 -1.47 0.668 2 -0.843 -- 0.339 12.3 21.65 1058 9.19 --
338.77 0.857 8.55 -2.57 0.701 2.32 -- -4.05 0.0846 12.2 22.7 1088 9.28 --
345.91 0.866 8.43 -1.55 0.705 2.03 -- -- 0.356 12.1 21.72 1055 9.5 --
356.55 0.879 8.55 -2.57 -- 2.09 -- -3.81 0.0935 -- 22.7 1239 9.45 --
451.02 0.996 8.35 -1.04 0.563 -- 0.572 -- 0.709 7.11 -- -- -- --
451.4 0.995 8.35 -1.03 0.566 -- -- -- 0.71 7.71 -- -- -- --
364.4 0.889 8.45 -1.52 -- 1.83 -- -- 0.31 -- 21.61 1115 7.66 --
404.49 0.937 8.39 -- 0.615 1.62 -- -- 0.558 11.6 22.2 1042 9.02 --
468.71 1.01 8.36 -1.02 -- -- -- -- 0.718 -- -- -- -- --
479.31 1.02 8.32 -- 0.559 -- -- -- 0.824 7.84 -- -- -- --
420.07 0.955 8.4 -- -- 1.54 -- -- 0.561 -- 21.53 807 4.97 --
496.25 1.04 8.33 -- -- -- -- -- 0.831 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 342.93 radiation 30 14400 < th dose independent rect. 16 4
2 342.98 radiation 30 14400 < th dose independent rect. 16 8
4 343.09 radiation 20 1440 < th dose dependent rect. 18 11
9 343.44 radiation 30 14400 < th dose independent rect. 16 11
13 343.74 temperature 20 720 > th dose dependent rect. 17 15
14 343.89 radiation 1 1440 < th dose dependent rect. 18 9
17 344.30 radiation 20 1440 < th dose dependent rect. 18 9
18 344.44 radiation 1 1440 < th dose dependent rect. 18 7
21 344.63 radiation 1 1440 < th dose dependent rect. 18 2
36 347.15 temperature 20 720 > th dose dependent sin 12 NA
54 349.45 temperature 25 1440 > th dose dependent rect. 16 1
63 350.48 radiation 20 14400 < th dose independent rect. 3 3
70 351.16 temperature 25 1440 > th dose dependent rect. 13 11
81 351.47 temperature 25 1440 > th dose dependent rect. 13 6
82 351.47 temperature 25 1440 > th dose dependent rect. 13 19
114 351.83 temperature 25 1440 > th dose dependent sin 17 NA
128 351.99 humidity 90 43200 > th dose independent rect. 5 1
167 352.73 humidity 70 14400 < th dose independent rect. 19 13
187 353.04 wind 5 43200 > th dose dependent rect. 10 12
208 353.55 wind 7 43200 > th dose independent rect. 6 15
212 353.64 wind 7 43200 > th dose independent rect. 4 17
216 353.68 wind 7 43200 < th dose independent rect. 6 15
220 353.75 wind 7 43200 < th dose independent rect. 4 17
228 353.82 wind 5 43200 > th dose dependent rect. 10 6
264 354.10 wind 7 43200 > th dose independent sin 0 NA
270 354.13 wind 7 43200 < th dose independent sin 0 NA
294 354.27 temperature 25 1440 > th dose dependent rect. 5 19
311 354.34 radiation 20 14400 < th dose independent rect. 5 1
337 354.42 radiation 1 1440 < th dose dependent rect. 8 22
360 354.48 humidity 90 43200 > th dose dependent rect. 21 2
361 354.48 temperature 25 1440 > th dose dependent rect. 21 23
372 354.52 wind 5 43200 > th dose dependent sin 21 NA
373 354.52 temperature 25 1440 > th dose dependent no NA NA
422 354.68 wind 7 43200 > th dose independent rect. 6 10
425 354.69 wind 7 43200 > th dose independent rect. 4 12
436 354.72 wind 7 43200 < th dose independent rect. 6 10
440 354.73 wind 7 43200 < th dose independent rect. 4 12
458 354.81 radiation 10 14400 > th dose dependent rect. 17 13
533 355.02 wind 7 43200 > th dose independent rect. 9 18
538 355.04 wind 7 43200 > th dose independent rect. 10 22
561 355.08 wind 7 43200 < th dose independent rect. 9 18
565 355.10 radiation 1 1440 > th dose independent rect. 18 1
578 355.11 radiation 1 1440 < th dose independent rect. 18 2
606 355.18 wind 7 43200 < th dose independent rect. 10 22
647 355.29 radiation 1 1440 < th dose independent rect. 18 9
654 355.31 temperature 25 1440 > th dose dependent rect. 15 23
691 355.42 radiation 1 1440 < th dose independent rect. 18 6
722 355.49 wind 7 43200 > th dose independent rect. 16 23
729 355.52 wind 7 43200 > th dose independent rect. 19 23
746 355.56 radiation 1 14400 > th dose dependent rect. 18 1
794 355.66 wind 7 43200 > th dose independent no NA NA
800 355.68 humidity 90 43200 > th dose independent rect. 22 1
801 355.68 wind 7 43200 < th dose independent rect. 19 23
802 355.68 radiation 40 14400 > th dose dependent rect. 15 18
818 355.73 wind 7 43200 < th dose independent rect. 16 23
839 355.82 radiation 1 1440 < th dose dependent sin 14 NA
849 355.86 wind 7 43200 < th dose independent no NA NA
867 355.94 humidity 90 43200 < th dose independent rect. 22 1
886 356.01 humidity 60 14400 < th dose independent rect. 17 1
920 356.20 humidity 90 43200 > th dose independent rect. 4 3
971 356.47 wind 5 43200 > th dose independent rect. 10 5
993 356.59 wind 7 43200 > th dose independent rect. 13 23