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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0861000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.17 (0.0232) R2 : 0.000171
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0136 (0.0489) R2dN8 : 0.00022 R2N8 : 0.000171
σ : 0.438
deviance : 87.93
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
78.7 0.417 3.12 0.607 0.217 -0.494 0.133 0.432 0.167 1.51 14.51 6445 -- --
78.85 0.414 3.14 0.514 0.216 -0.542 0.132 -- 0.138 1.55 10.94 6433 -- --
78.76 0.413 3.12 0.594 0.222 -0.505 -- 0.456 0.166 1.63 12.31 6464 -- --
78.91 0.414 3.13 0.504 0.221 -0.547 -- -- 0.138 1.72 11.17 6437 -- --
81.4 0.42 3.11 0.609 -- -0.496 -- 0.48 0.163 -- 12.26 6114 -- --
83.86 0.429 3.16 0.239 0.202 -- 0.0877 -- 0.00943 1.85 -- -- -- --
83.88 0.429 3.16 0.237 0.203 -- -- -- 0.00876 2.04 -- -- -- --
81.59 0.423 3.14 0.35 -- -0.574 -- -- 0.0901 -- 10.93 6106 -- --
82.79 0.424 3.16 -- 0.242 -0.233 -- -- -0.0202 1.81 27.44 1369 -- --
86.35 0.434 3.16 0.245 -- -- -- -- 0.0135 -- -- -- -- --
85.36 0.432 3.17 -- 0.207 -- -- -- -0.0176 2.07 -- -- -- --
84.63 0.43 3.15 -- -- -0.465 -- -- 0.0389 -- 10.93 6106 -- --
87.93 0.438 3.17 -- -- -- -- -- -0.0136 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 67.39 humidity 90.0 90 < th dose dependent rect. 2 3
3 67.52 humidity 80.0 90 < th dose independent rect. 2 3
9 67.68 humidity 90.0 10 < th dose dependent rect. 3 1
15 67.84 humidity 90.0 10 < th dose independent rect. 3 1
29 69.33 humidity 80.0 90 < th dose dependent rect. 24 3
49 70.96 atmosphere 1005.0 10 > th dose dependent rect. 3 1
57 74.40 temperature 20.0 10 < th dose dependent rect. 3 1
62 74.72 humidity 80.0 30 > th dose dependent rect. 2 1
64 74.80 temperature 25.0 30 < th dose independent rect. 2 1
65 74.80 humidity 80.0 30 > th dose independent rect. 2 1
69 74.81 atmosphere 1005.0 30 > th dose independent rect. 2 1
70 74.81 atmosphere 995.0 30 > th dose dependent rect. 2 1
74 74.83 wind 1.0 30 < th dose independent rect. 2 1
76 74.84 wind 3.0 30 < th dose dependent rect. 2 1
79 74.85 temperature 30.0 30 < th dose dependent rect. 2 1
86 74.89 wind 9.0 30 < th dose independent rect. 2 1
87 74.89 temperature 10.0 30 > th dose independent rect. 2 1
90 74.89 humidity 50.0 30 > th dose independent rect. 2 1
94 74.89 atmosphere 1010.0 30 < th dose independent rect. 2 1
96 74.89 radiation 1.0 30 < th dose independent rect. 2 1
101 74.89 precipitation 0.1 30 < th dose independent rect. 2 1
102 74.89 temperature 10.0 30 > th dose independent rect. 3 23
103 74.89 radiation 1.0 30 < th dose dependent rect. 2 1
108 74.89 precipitation 0.1 30 < th dose dependent rect. 2 1
109 74.91 wind 5.0 30 < th dose independent rect. 2 1
114 74.98 temperature 10.0 30 > th dose dependent rect. 2 1
127 75.22 atmosphere 1015.0 30 < th dose dependent rect. 2 1
136 75.32 humidity 90.0 720 < th dose dependent rect. 3 1
165 75.57 humidity 80.0 1440 > th dose independent rect. 2 1
174 75.64 humidity 80.0 720 < th dose independent rect. 2 1
200 75.72 wind 1.0 30 > th dose independent rect. 2 1
242 76.03 wind 9.0 30 < th dose independent rect. 3 23
281 76.51 radiation 1.0 14400 < th dose independent rect. 3 3
287 76.53 radiation 1.0 14400 < th dose independent rect. 23 7
293 76.55 radiation 1.0 14400 > th dose independent rect. 4 2
312 76.71 atmosphere 1000.0 43200 < th dose dependent rect. 12 1
336 76.86 wind 9.0 43200 > th dose dependent rect. 20 7
340 76.90 wind 9.0 43200 > th dose dependent rect. 20 4
352 76.99 wind 9.0 43200 > th dose independent rect. 20 7
363 77.05 wind 9.0 43200 < th dose independent rect. 20 7
368 77.06 wind 9.0 43200 > th dose dependent rect. 17 10
370 77.07 wind 9.0 43200 > th dose dependent rect. 17 14
386 77.10 wind 9.0 43200 > th dose independent rect. 20 5
401 77.13 wind 9.0 43200 > th dose dependent rect. 17 7
412 77.17 wind 9.0 43200 < th dose independent rect. 18 9
436 77.25 wind 9.0 43200 < th dose independent rect. 20 5
448 77.29 humidity 90.0 14400 < th dose independent rect. 21 1
456 77.31 wind 7.0 43200 > th dose independent rect. 20 1
457 77.31 atmosphere 995.0 43200 < th dose independent rect. 14 2
459 77.31 wind 9.0 43200 > th dose dependent rect. 20 1
470 77.35 atmosphere 995.0 43200 > th dose independent rect. 14 2
472 77.35 atmosphere 995.0 43200 > th dose independent rect. 5 11
486 77.38 wind 9.0 43200 < th dose independent rect. 18 6
488 77.38 wind 5.0 43200 < th dose dependent rect. 9 1
493 77.41 wind 7.0 43200 < th dose independent rect. 20 1
495 77.41 wind 9.0 43200 > th dose dependent sin 13 NA
496 77.41 wind 1.0 43200 > th dose dependent rect. 9 1
512 77.43 atmosphere 1000.0 43200 < th dose independent rect. 12 1
527 77.45 atmosphere 995.0 43200 < th dose independent rect. 5 11
547 77.48 atmosphere 995.0 43200 > th dose independent sin 20 NA
551 77.48 wind 1.0 14400 < th dose dependent rect. 10 1
556 77.49 atmosphere 995.0 43200 > th dose independent sin 0 NA
564 77.50 atmosphere 995.0 43200 > th dose independent rect. 9 14
571 77.51 atmosphere 995.0 43200 > th dose independent rect. 5 17
577 77.52 atmosphere 995.0 43200 > th dose independent rect. 11 11
593 77.54 atmosphere 995.0 43200 < th dose independent sin 20 NA
630 77.57 atmosphere 995.0 43200 < th dose independent rect. 9 14
633 77.57 wind 3.0 43200 > th dose dependent rect. 20 1
644 77.59 atmosphere 995.0 43200 < th dose independent sin 0 NA
665 77.60 wind 3.0 43200 > th dose dependent rect. 14 21
668 77.61 humidity 90.0 14400 > th dose independent rect. 21 1
670 77.61 atmosphere 995.0 43200 < th dose independent rect. 12 10
673 77.61 wind 5.0 43200 < th dose independent rect. 14 21
674 77.61 radiation 1.0 14400 < th dose dependent rect. 16 1
676 77.62 wind 1.0 43200 > th dose independent rect. 8 2
693 77.62 wind 9.0 43200 > th dose independent rect. 17 15
694 77.62 radiation 30.0 4320 < th dose independent rect. 16 16
713 77.63 wind 5.0 43200 > th dose independent rect. 14 20
714 77.63 atmosphere 1000.0 43200 < th dose dependent sin 23 NA
739 77.65 atmosphere 995.0 43200 < th dose dependent rect. 14 8
754 77.66 radiation 1.0 43200 < th dose dependent rect. 24 3
773 77.68 radiation 1.0 14400 > th dose independent sin 12 NA
792 77.68 wind 9.0 43200 < th dose dependent rect. 20 1
799 77.69 humidity 90.0 43200 > th dose independent rect. 12 4
807 77.70 humidity 80.0 14400 > th dose independent rect. 17 3
815 77.70 wind 9.0 43200 < th dose independent rect. 18 13
829 77.71 humidity 80.0 14400 > th dose dependent rect. 21 2
866 77.72 wind 9.0 43200 > th dose dependent rect. 17 4
932 77.77 radiation 1.0 14400 < th dose independent sin 12 NA
933 77.77 humidity 90.0 14400 < th dose independent rect. 18 1
944 77.78 radiation 1.0 14400 > th dose independent rect. 16 3
969 77.78 wind 1.0 43200 > th dose dependent rect. 2 20
991 77.79 temperature 20.0 10 < th dose dependent rect. 24 5
992 77.79 humidity 80.0 14400 > th dose dependent rect. 18 5
997 77.79 wind 9.0 43200 < th dose dependent rect. 2 20