Os03g0860600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 2-oxoglutarate-dependent oxygenase.
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Os03g0860600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 2-oxoglutarate-dependent oxygenase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 153.34 | 0.582 | 8.9 | 0.859 | 3.34 | 1.95 | -2.84 | -0.326 | -0.466 | 21.2 | 19.66 | 398 | 23.4 | -- |
| 153.32 | 0.577 | 8.89 | 0.897 | 3.38 | 1.94 | -2.8 | -- | -0.462 | 21.1 | 19.32 | 411 | 23.6 | -- |
| 161.51 | 0.592 | 9 | 1.06 | 6.55 | 4.57 | -- | 3.47 | -0.424 | 20.8 | 4.703 | 383 | 0.33 | -- |
| 179.99 | 0.625 | 8.9 | 0.973 | 3.55 | 2.1 | -- | -- | -0.486 | 21.1 | 18.6 | 412 | 23.8 | -- |
| 407.48 | 0.945 | 8.65 | 1.81 | -- | -2.48 | -- | 3 | 0.117 | -- | 4.703 | 383 | 0.33 | -- |
| 208.48 | 0.677 | 8.8 | 1.28 | 2.74 | -- | -3.09 | -- | -0.136 | 20.5 | -- | -- | -- | -- |
| 238.93 | 0.724 | 8.8 | 1.38 | 2.75 | -- | -- | -- | -0.135 | 20.4 | -- | -- | -- | -- |
| 254.36 | 0.746 | 8.71 | 1.45 | -- | -2.86 | -- | -- | -0.0783 | -- | -49.79 | 22 | 21.9 | -- |
| 202.44 | 0.663 | 8.95 | -- | 3.82 | 2.59 | -- | -- | -0.636 | 21.3 | 17.42 | 422 | 23.6 | -- |
| 661.25 | 1.2 | 8.73 | 1.37 | -- | -- | -- | -- | -0.163 | -- | -- | -- | -- | -- |
| 289.23 | 0.796 | 8.84 | -- | 2.75 | -- | -- | -- | -0.289 | 20.5 | -- | -- | -- | -- |
| 291.54 | 0.798 | 8.76 | -- | -- | -2.75 | -- | -- | -0.283 | -- | -618.5 | 5 | 21.6 | -- |
| 710.57 | 1.24 | 8.76 | -- | -- | -- | -- | -- | -0.315 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 149.19 | temperature | 25 | 270 | < th | dose independent | rect. | 5 | 6 |
| 5 | 152.45 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 16 |
| 17 | 154.88 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 18 | 155.17 | temperature | 25 | 270 | < th | dose dependent | rect. | 5 | 4 |
| 21 | 155.63 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 23 | 155.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 7 |
| 25 | 156.24 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 1 |
| 45 | 158.20 | temperature | 20 | 270 | > th | dose dependent | sin | 4 | NA |
| 47 | 158.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 95 | 161.20 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |
| 128 | 162.49 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 160 | 163.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 7 |
| 218 | 164.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 232 | 165.19 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 245 | 165.38 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 5 |
| 249 | 165.48 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 260 | 165.63 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 428 | 168.49 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 9 | 14 |
| 510 | 169.72 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 532 | 169.93 | atmosphere | 1000 | 30 | > th | dose dependent | rect. | 5 | 18 |
| 745 | 172.32 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 7 | 16 |
| 809 | 172.93 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 10 | 7 |
| 839 | 173.17 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 846 | 173.21 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 913 | 173.92 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 5 | 16 |