Os03g0857200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0857200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.94 | 0.398 | 8.04 | 0.244 | 1.84 | 0.0898 | -1.04 | -2.83 | 0.284 | 9.68 | 20.7 | 3706 | -- | -- |
| 75.93 | 0.406 | 8.15 | -0.0516 | 1.84 | 1 | -1.24 | -- | 0.16 | 9.71 | 15.7 | 10948 | -- | -- |
| 75.91 | 0.406 | 8.03 | 0.264 | 1.85 | 0.0768 | -- | -2.99 | 0.302 | 9.65 | 20.82 | 3684 | -- | -- |
| 81.45 | 0.42 | 8.14 | -0.0733 | 1.85 | 1.04 | -- | -- | 0.166 | 9.67 | 15.69 | 10810 | -- | -- |
| 259.69 | 0.751 | 8.08 | 0.301 | -- | 0.709 | -- | -2.17 | 0.477 | -- | 22.6 | 839 | -- | -- |
| 88.91 | 0.442 | 8.18 | -0.599 | 1.84 | -- | -1.2 | -- | 0.00663 | 9.72 | -- | -- | -- | -- |
| 94.36 | 0.455 | 8.18 | -0.645 | 1.85 | -- | -- | -- | 0.00398 | 9.68 | -- | -- | -- | -- |
| 266.53 | 0.76 | 8.19 | -0.202 | -- | 1.39 | -- | -- | 0.217 | -- | 18.8 | 872 | -- | -- |
| 81.52 | 0.421 | 8.15 | -- | 1.84 | 1.1 | -- | -- | 0.166 | 9.66 | 15.7 | 10813 | -- | -- |
| 298.01 | 0.807 | 8.23 | -0.662 | -- | -- | -- | -- | 0.00692 | -- | -- | -- | -- | -- |
| 105.34 | 0.48 | 8.17 | -- | 1.85 | -- | -- | -- | 0.0758 | 9.71 | -- | -- | -- | -- |
| 240.88 | 0.723 | 8.15 | -- | -- | 1.21 | -- | -- | 0.395 | -- | 25.81 | 728 | -- | -- |
| 309.55 | 0.821 | 8.22 | -- | -- | -- | -- | -- | 0.0803 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.16 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 16 |
| 5 | 72.49 | temperature | 20 | 4320 | < th | dose independent | rect. | 10 | 16 |
| 6 | 72.51 | temperature | 20 | 4320 | > th | dose independent | rect. | 10 | 16 |
| 7 | 72.52 | temperature | 20 | 4320 | > th | dose independent | rect. | 11 | 14 |
| 8 | 72.53 | temperature | 20 | 4320 | < th | dose independent | rect. | 11 | 14 |
| 17 | 72.59 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 18 | 72.59 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 25 | 72.62 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 28 | 72.63 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 9 |
| 29 | 72.63 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 11 |
| 39 | 72.66 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 11 |
| 47 | 72.69 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 9 |
| 151 | 73.20 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 19 |
| 176 | 73.26 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 21 |
| 235 | 73.48 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 243 | 73.51 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 246 | 73.52 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 251 | 73.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 3 |
| 265 | 73.57 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 275 | 73.59 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 23 |
| 276 | 73.59 | temperature | 25 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 294 | 73.63 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 302 | 73.65 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 2 |
| 307 | 73.66 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 308 | 73.66 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 13 |
| 324 | 73.68 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 23 |
| 360 | 73.74 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 394 | 73.79 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 396 | 73.79 | temperature | 25 | 4320 | < th | dose dependent | rect. | 10 | 16 |
| 458 | 73.89 | temperature | 25 | 4320 | < th | dose dependent | sin | 17 | NA |
| 479 | 73.91 | humidity | 50 | 43200 | < th | dose dependent | rect. | 19 | 9 |
| 609 | 74.14 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 612 | 74.15 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 616 | 74.15 | humidity | 90 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 635 | 74.19 | temperature | 15 | 4320 | > th | dose dependent | rect. | 19 | 5 |
| 646 | 74.21 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 649 | 74.22 | humidity | 60 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 689 | 74.28 | humidity | 50 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 700 | 74.30 | humidity | 60 | 43200 | < th | dose independent | rect. | 22 | 4 |
| 701 | 74.30 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 722 | 74.34 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 730 | 74.35 | humidity | 80 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 787 | 74.42 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 854 | 74.51 | temperature | 20 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 873 | 74.53 | temperature | 20 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 874 | 74.53 | temperature | 20 | 4320 | < th | dose independent | rect. | 9 | 3 |
| 902 | 74.56 | temperature | 20 | 4320 | > th | dose independent | rect. | 9 | 3 |
| 917 | 74.58 | humidity | 50 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 936 | 74.59 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 938 | 74.59 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 978 | 74.64 | temperature | 20 | 720 | < th | dose independent | sin | 3 | NA |
| 984 | 74.64 | temperature | 25 | 4320 | < th | dose dependent | rect. | 11 | 1 |
| 991 | 74.64 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 13 |