Os03g0857000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os03g0857000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 197.51 | 0.66 | 4.94 | 4.21 | 1.33 | -29.3 | -0.858 | 181 | 0.371 | 22.1 | 995.3 | 1371 | -- | -- |
| 208.69 | 0.678 | 5.56 | 0.569 | 1.31 | 1.28 | -0.934 | -- | 0.364 | 22.3 | 997.4 | 1423 | -- | -- |
| 199.22 | 0.657 | 5.02 | 3.82 | 1.36 | -29.3 | -- | 182 | 0.376 | 22 | 996.2 | 1239 | -- | -- |
| 201.23 | 0.661 | 5.56 | 0.575 | 1.32 | 1.88 | -- | -- | 0.373 | 22.1 | 997.4 | 1311 | -- | -- |
| 308.1 | 0.818 | 4.96 | 3.96 | -- | -29.3 | -- | 182 | 0.378 | -- | 996 | 1279 | -- | -- |
| 216.14 | 0.689 | 5.56 | 0.618 | 1.31 | -- | -0.91 | -- | 0.345 | 22.3 | -- | -- | -- | -- |
| 219.43 | 0.694 | 5.56 | 0.656 | 1.32 | -- | -- | -- | 0.348 | 22.2 | -- | -- | -- | -- |
| 307.12 | 0.816 | 5.52 | 0.602 | -- | 1.8 | -- | -- | 0.379 | -- | 996.7 | 1311 | -- | -- |
| 210.02 | 0.675 | 5.57 | -- | 1.33 | 2.03 | -- | -- | 0.317 | 22.1 | 997.4 | 1326 | -- | -- |
| 325.39 | 0.843 | 5.53 | 0.675 | -- | -- | -- | -- | 0.35 | -- | -- | -- | -- | -- |
| 230.75 | 0.711 | 5.58 | -- | 1.32 | -- | -- | -- | 0.275 | 22.2 | -- | -- | -- | -- |
| 316.5 | 0.829 | 5.53 | -- | -- | 1.94 | -- | -- | 0.318 | -- | 996.8 | 1311 | -- | -- |
| 337.39 | 0.857 | 5.54 | -- | -- | -- | -- | -- | 0.276 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 185.43 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 16 | 18 |
| 8 | 189.42 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 22 | 12 |
| 10 | 189.54 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 23 | 7 |
| 12 | 189.61 | temperature | 30 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 41 | 190.60 | atmosphere | 1000 | 720 | < th | dose dependent | sin | 8 | NA |
| 49 | 190.91 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 4 | 7 |
| 52 | 190.97 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 54 | 190.99 | temperature | 25 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 60 | 191.28 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 3 | 3 |
| 63 | 191.34 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 4 | 9 |
| 70 | 191.44 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 4 | 7 |
| 80 | 191.61 | atmosphere | 1000 | 270 | < th | dose dependent | sin | 5 | NA |
| 96 | 191.88 | atmosphere | 1000 | 90 | > th | dose independent | sin | 6 | NA |
| 102 | 191.98 | atmosphere | 1000 | 10 | < th | dose dependent | sin | 4 | NA |
| 115 | 192.12 | atmosphere | 1000 | 10 | > th | dose independent | sin | 5 | NA |
| 121 | 192.18 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 1 | 12 |
| 123 | 192.23 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 18 | 11 |
| 130 | 192.37 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 11 | 22 |
| 145 | 192.56 | atmosphere | 1000 | 90 | > th | dose independent | sin | 3 | NA |
| 176 | 192.86 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 6 | 23 |
| 178 | 192.89 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 24 | 13 |
| 179 | 192.90 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 24 | 15 |
| 201 | 193.17 | atmosphere | 1000 | 90 | < th | dose independent | sin | 5 | NA |
| 211 | 193.26 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 24 | 12 |
| 219 | 193.41 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 8 | 23 |
| 232 | 193.50 | temperature | 30 | 4320 | < th | dose independent | rect. | 19 | 14 |
| 265 | 193.75 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 22 | 7 |
| 311 | 194.14 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 24 | 11 |
| 327 | 194.25 | temperature | 25 | 270 | > th | dose independent | rect. | 2 | 7 |
| 333 | 194.29 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 16 | 5 |
| 362 | 194.45 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 1 | 4 |
| 376 | 194.52 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 6 | 15 |
| 383 | 194.55 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 386 | 194.56 | atmosphere | 995 | 1440 | > th | dose independent | sin | 4 | NA |
| 403 | 194.62 | temperature | 30 | 4320 | < th | dose independent | rect. | 1 | 8 |
| 437 | 194.76 | atmosphere | 995 | 1440 | > th | dose independent | sin | 12 | NA |
| 486 | 194.96 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 4 | 17 |
| 489 | 194.98 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 6 |
| 494 | 195.03 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 19 | 15 |
| 500 | 195.06 | wind | 5 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 510 | 195.10 | wind | 5 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 523 | 195.14 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 24 | 16 |
| 538 | 195.20 | temperature | 25 | 720 | < th | dose independent | rect. | 2 | 4 |
| 570 | 195.31 | humidity | 80 | 10 | < th | dose independent | rect. | 22 | 10 |
| 572 | 195.32 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 22 | 8 |
| 629 | 195.48 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 8 | 23 |
| 632 | 195.49 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 23 | 3 |
| 696 | 195.67 | atmosphere | 1000 | 720 | < th | dose independent | sin | 9 | NA |
| 727 | 195.76 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 751 | 195.83 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 17 | 22 |
| 759 | 195.86 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 775 | 195.92 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 2 | 12 |
| 786 | 195.96 | temperature | 25 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 795 | 195.99 | atmosphere | 995 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 803 | 196.01 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 13 | 23 |
| 815 | 196.05 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 1 | 20 |
| 819 | 196.06 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 2 | 14 |
| 829 | 196.08 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 836 | 196.09 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 13 | 19 |
| 838 | 196.10 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 9 |
| 856 | 196.12 | radiation | 10 | 30 | > th | dose independent | rect. | 7 | 1 |
| 872 | 196.14 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 889 | 196.20 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 9 | 21 |
| 954 | 196.34 | wind | 9 | 14400 | > th | dose dependent | rect. | 5 | 9 |
| 956 | 196.35 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 7 |
| 961 | 196.35 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 973 | 196.37 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 985 | 196.40 | atmosphere | 995 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 1000 | 196.42 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 22 | 23 |