Os03g0856400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein kinase AKINbetagamma-2.
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Os03g0856400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein kinase AKINbetagamma-2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.29 | 0.158 | 11.5 | 0.12 | 0.0656 | 0.321 | 0.149 | 1.48 | 0.213 | 21 | 6.9 | 5597 | -- | -- |
| 13.02 | 0.168 | 11.5 | 0.197 | 0.0645 | 0.093 | 0.117 | -- | 0.143 | 20.9 | 6.2 | 5720 | -- | -- |
| 11.36 | 0.157 | 11.5 | 0.111 | 0.0665 | 0.317 | -- | 1.44 | 0.216 | 20.5 | 6.916 | 5619 | -- | -- |
| 13.07 | 0.168 | 11.5 | 0.194 | 0.0637 | 0.0944 | -- | -- | 0.143 | 20.5 | 6.2 | 5720 | -- | -- |
| 11.61 | 0.159 | 11.5 | 0.112 | -- | 0.312 | -- | 1.43 | 0.214 | -- | 6.913 | 5619 | -- | -- |
| 13.19 | 0.17 | 11.5 | 0.243 | 0.0626 | -- | 0.129 | -- | 0.131 | 20.8 | -- | -- | -- | -- |
| 13.25 | 0.17 | 11.5 | 0.239 | 0.0632 | -- | -- | -- | 0.132 | 20.4 | -- | -- | -- | -- |
| 13.26 | 0.17 | 11.5 | 0.151 | -- | 0.107 | -- | -- | 0.109 | -- | 7.461 | 21336 | -- | -- |
| 13.14 | 0.169 | 11.5 | -- | 0.0671 | 0.304 | -- | -- | 0.0752 | 21 | 6.555 | 21662 | -- | -- |
| 13.47 | 0.171 | 11.5 | 0.239 | -- | -- | -- | -- | 0.131 | -- | -- | -- | -- | -- |
| 14.75 | 0.18 | 11.5 | -- | 0.0623 | -- | -- | -- | 0.105 | 20.7 | -- | -- | -- | -- |
| 13.31 | 0.17 | 11.6 | -- | -- | 0.314 | -- | -- | 0.0683 | -- | 6.5 | 21613 | -- | -- |
| 14.97 | 0.181 | 11.5 | -- | -- | -- | -- | -- | 0.104 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.20 | wind | 9 | 14400 | > th | dose dependent | rect. | 15 | 6 |
| 2 | 11.20 | wind | 9 | 14400 | > th | dose dependent | rect. | 20 | 9 |
| 6 | 11.22 | wind | 9 | 14400 | > th | dose independent | rect. | 20 | 9 |
| 14 | 11.23 | wind | 9 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 15 | 11.23 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 37 | 11.27 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 38 | 11.27 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 52 | 11.28 | wind | 9 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 59 | 11.28 | wind | 9 | 14400 | > th | dose dependent | rect. | 19 | 2 |
| 65 | 11.29 | wind | 9 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 72 | 11.29 | wind | 5 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 112 | 11.31 | wind | 9 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 151 | 11.31 | wind | 9 | 14400 | > th | dose dependent | rect. | 15 | 16 |
| 219 | 11.33 | wind | 9 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 230 | 11.33 | wind | 9 | 14400 | > th | dose dependent | sin | 11 | NA |
| 232 | 11.33 | atmosphere | 1000 | 14400 | < th | dose dependent | sin | 4 | NA |
| 293 | 11.34 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 294 | 11.34 | atmosphere | 1005 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 364 | 11.35 | atmosphere | 1005 | 14400 | < th | dose dependent | sin | 1 | NA |
| 433 | 11.36 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 435 | 11.36 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 695 | 11.38 | atmosphere | 1000 | 14400 | < th | dose dependent | no | NA | NA |
| 784 | 11.38 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 7 | 22 |
| 811 | 11.39 | atmosphere | 1000 | 14400 | > th | dose independent | sin | 3 | NA |
| 814 | 11.39 | atmosphere | 1000 | 14400 | < th | dose independent | sin | 2 | NA |
| 909 | 11.39 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 10 | 19 |