Os03g0856200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to KAP-2.
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Os03g0856200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to KAP-2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.96 | 0.257 | 11.2 | -0.68 | 0.199 | 0.107 | 0.467 | -1.58 | -0.312 | 22.5 | 22.18 | 1463 | -- | -- |
| 35.45 | 0.277 | 11.2 | -0.22 | 0.203 | 0.162 | 0.404 | -- | -0.209 | 22.6 | 22.9 | 5578 | -- | -- |
| 30.79 | 0.258 | 11.2 | -0.681 | 0.199 | 0.106 | -- | -1.55 | -0.309 | 22.3 | 22.2 | 1517 | -- | -- |
| 36.05 | 0.28 | 11.2 | -0.266 | 0.211 | 0.171 | -- | -- | -0.231 | 22.6 | 22.6 | 9450 | -- | -- |
| 33.17 | 0.268 | 11.2 | -0.699 | -- | 0.108 | -- | -1.58 | -0.314 | -- | 22.2 | 1536 | -- | -- |
| 36.38 | 0.283 | 11.2 | -0.125 | 0.206 | -- | 0.426 | -- | -0.148 | 22.4 | -- | -- | -- | -- |
| 37.11 | 0.285 | 11.2 | -0.141 | 0.204 | -- | -- | -- | -0.149 | 22.3 | -- | -- | -- | -- |
| 37.11 | 0.284 | 11.2 | -0.288 | -- | 0.235 | -- | -- | -0.205 | -- | 26.6 | 806 | -- | -- |
| 37.35 | 0.285 | 11.2 | -- | 0.2 | 0.0852 | -- | -- | -0.166 | 22.1 | 23.2 | 9382 | -- | -- |
| 39.65 | 0.294 | 11.2 | -0.138 | -- | -- | -- | -- | -0.149 | -- | -- | -- | -- | -- |
| 37.64 | 0.287 | 11.2 | -- | 0.203 | -- | -- | -- | -0.133 | 22.2 | -- | -- | -- | -- |
| 38.03 | 0.287 | 11.2 | -- | -- | 0.223 | -- | -- | -0.166 | -- | 26.8 | 774 | -- | -- |
| 40.16 | 0.296 | 11.2 | -- | -- | -- | -- | -- | -0.133 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 11 | 29.79 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 15 | 29.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 15 |
| 58 | 29.95 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 62 | 29.97 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 77 | 29.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 83 | 29.99 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 106 | 30.02 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 113 | 30.04 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 18 |
| 120 | 30.06 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 137 | 30.08 | wind | 3 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 141 | 30.08 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 16 |
| 151 | 30.09 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 12 |
| 154 | 30.10 | wind | 1 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 156 | 30.10 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 18 |
| 180 | 30.12 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 11 |
| 184 | 30.12 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 192 | 30.12 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 14 |
| 243 | 30.14 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 11 |
| 245 | 30.14 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 262 | 30.14 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |
| 263 | 30.14 | radiation | 1 | 43200 | < th | dose dependent | sin | 10 | NA |
| 268 | 30.14 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 271 | 30.14 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 15 |
| 275 | 30.14 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 23 |
| 277 | 30.15 | radiation | 1 | 43200 | < th | dose independent | no | NA | NA |
| 342 | 30.15 | radiation | 1 | 43200 | < th | dose independent | rect. | 19 | 23 |
| 353 | 30.15 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 371 | 30.16 | radiation | 1 | 43200 | < th | dose independent | sin | 0 | NA |
| 373 | 30.16 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 386 | 30.16 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 389 | 30.16 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 413 | 30.17 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 6 |
| 414 | 30.17 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 6 |
| 422 | 30.17 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 13 |
| 439 | 30.17 | temperature | 10 | 1440 | > th | dose dependent | sin | 14 | NA |
| 464 | 30.17 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 480 | 30.17 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 14 |
| 511 | 30.17 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 23 |
| 513 | 30.18 | radiation | 1 | 43200 | > th | dose independent | sin | 1 | NA |
| 623 | 30.18 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 714 | 30.19 | radiation | 1 | 43200 | > th | dose independent | no | NA | NA |
| 715 | 30.19 | radiation | 1 | 43200 | < th | dose independent | sin | 10 | NA |
| 858 | 30.20 | radiation | 1 | 43200 | > th | dose independent | sin | 7 | NA |
| 872 | 30.20 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 951 | 30.21 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 6 |
| 976 | 30.21 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 983 | 30.22 | wind | 3 | 43200 | < th | dose independent | rect. | 12 | 2 |