Os03g0855700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleic acid-binding, OB-fold domain containing protein.
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Os03g0855700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleic acid-binding, OB-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.65 | 0.375 | 10.8 | -0.36 | 0.747 | 0.292 | 1.88 | -0.906 | -0.849 | 7.64 | 2 | 1 | -- | -- |
| 67.18 | 0.385 | 10.8 | -0.391 | 0.729 | 0.367 | 1.46 | -- | -0.851 | 6.85 | 10.93 | 3 | -- | -- |
| 71.81 | 0.398 | 10.8 | -0.352 | 0.747 | 0.307 | -- | -0.318 | -0.855 | 7.37 | 10.41 | 3 | -- | -- |
| 71.91 | 0.395 | 10.8 | -0.355 | 0.735 | 0.361 | -- | -- | -0.856 | 7.02 | 10.1 | 11 | -- | -- |
| 93 | 0.452 | 10.8 | -0.288 | -- | 0.493 | -- | -0.00846 | -0.857 | -- | 4.85 | 4 | -- | -- |
| 72.59 | 0.399 | 10.8 | -0.352 | 0.893 | -- | 1.1 | -- | -0.855 | 8.39 | -- | -- | -- | -- |
| 76.27 | 0.409 | 10.8 | -0.316 | 0.888 | -- | -- | -- | -0.854 | 8.6 | -- | -- | -- | -- |
| 92.63 | 0.448 | 10.8 | -0.286 | -- | 0.508 | -- | -- | -0.85 | -- | 4.85 | 4 | -- | -- |
| 75.17 | 0.404 | 10.8 | -- | 0.738 | 0.334 | -- | -- | -0.82 | 7.18 | 10.07 | 12 | -- | -- |
| 120.6 | 0.513 | 10.8 | -0.314 | -- | -- | -- | -- | -0.846 | -- | -- | -- | -- | -- |
| 78.91 | 0.416 | 10.8 | -- | 0.886 | -- | -- | -- | -0.819 | 8.63 | -- | -- | -- | -- |
| 94.78 | 0.453 | 10.8 | -- | -- | 0.511 | -- | -- | -0.819 | -- | 4.82 | 4 | -- | -- |
| 123.19 | 0.518 | 10.8 | -- | -- | -- | -- | -- | -0.811 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.21 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 1 | 16 |
| 5 | 60.67 | humidity | 80.0 | 30 | > th | dose independent | rect. | 1 | 15 |
| 6 | 60.67 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 1 | 18 |
| 23 | 61.42 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 1 | 16 |
| 24 | 61.43 | radiation | 20.0 | 30 | < th | dose dependent | sin | 4 | NA |
| 31 | 61.58 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 1 | 13 |
| 40 | 61.74 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 18 | 9 |
| 42 | 61.85 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 45 | 61.87 | humidity | 70.0 | 10 | > th | dose dependent | sin | 4 | NA |
| 52 | 61.93 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 66 | 62.13 | radiation | 10.0 | 30 | > th | dose independent | sin | 5 | NA |
| 68 | 62.14 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 1 | 6 |
| 73 | 62.16 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 1 | 11 |
| 121 | 62.51 | humidity | 70.0 | 720 | > th | dose independent | rect. | 18 | 10 |
| 122 | 62.51 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 123 | 62.51 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 1 | 11 |
| 148 | 62.64 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 1 | 3 |
| 152 | 62.65 | humidity | 80.0 | 30 | > th | dose independent | rect. | 1 | 11 |
| 174 | 62.77 | radiation | 10.0 | 10 | > th | dose independent | rect. | 15 | 21 |
| 177 | 62.78 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 1 | 3 |
| 180 | 62.80 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 187 | 62.84 | humidity | 80.0 | 30 | < th | dose independent | sin | 4 | NA |
| 188 | 62.84 | radiation | 10.0 | 10 | > th | dose independent | rect. | 15 | 23 |
| 198 | 62.88 | humidity | 90.0 | 720 | < th | dose independent | rect. | 20 | 4 |
| 207 | 62.91 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 256 | 63.07 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 4 | 10 |
| 262 | 63.09 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 16 | 14 |
| 266 | 63.10 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 276 | 63.14 | temperature | 20.0 | 30 | > th | dose independent | rect. | 1 | 5 |
| 278 | 63.15 | radiation | 10.0 | 10 | > th | dose independent | rect. | 13 | 23 |
| 300 | 63.20 | humidity | 50.0 | 720 | > th | dose dependent | sin | 14 | NA |
| 301 | 63.20 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 1 | 2 |
| 305 | 63.21 | humidity | 80.0 | 30 | > th | dose independent | sin | 5 | NA |
| 316 | 63.24 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 14 |
| 329 | 63.28 | humidity | 70.0 | 720 | > th | dose independent | rect. | 18 | 2 |
| 333 | 63.29 | radiation | 10.0 | 30 | > th | dose independent | rect. | 6 | 10 |
| 348 | 63.29 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 22 | 21 |
| 370 | 63.34 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 385 | 63.38 | radiation | 10.0 | 30 | > th | dose independent | rect. | 6 | 6 |
| 402 | 63.39 | radiation | 1.0 | 90 | < th | dose independent | sin | 3 | NA |
| 410 | 63.40 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 5 |
| 421 | 63.41 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 441 | 63.44 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 442 | 63.45 | humidity | 80.0 | 30 | < th | dose independent | rect. | 7 | 5 |
| 444 | 63.45 | humidity | 80.0 | 30 | < th | dose independent | rect. | 7 | 9 |
| 485 | 63.51 | humidity | 80.0 | 30 | < th | dose independent | rect. | 23 | 17 |
| 506 | 63.53 | radiation | 1.0 | 90 | < th | dose independent | rect. | 1 | 15 |
| 510 | 63.54 | humidity | 80.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 514 | 63.55 | humidity | 80.0 | 30 | < th | dose independent | rect. | 23 | 13 |
| 523 | 63.56 | humidity | 80.0 | 30 | < th | dose independent | rect. | 1 | 15 |
| 543 | 63.58 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 571 | 63.60 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 22 | 19 |
| 572 | 63.60 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 20 | 23 |
| 604 | 63.62 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 624 | 63.65 | radiation | 10.0 | 10 | > th | dose independent | no | NA | NA |
| 625 | 63.65 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 7 |
| 811 | 63.80 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 20 | 3 |
| 884 | 63.88 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 5 | 8 |
| 921 | 63.92 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 17 |
| 936 | 63.94 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 6 |
| 955 | 63.97 | humidity | 70.0 | 720 | > th | dose independent | sin | 12 | NA |
| 987 | 64.00 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 6 |
| 991 | 64.01 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 20 | 1 |