FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0855500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF295 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0295) R2 : 0.323
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.28 (0.0871) R2dE : 0.324 R2E : 0.323
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0139 (0.0623) R2dN8 : 0.000368 R2N8 : -0.00066
σ : 0.555
deviance : 141.95
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 33.3
memory length : 55
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 13.5
open length of G : 4.24

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
123.29 0.522 3.05 0.261 0.326 1.18 -0.405 2.7 -0.00581 17.6 30 30 13 4.8
142.16 0.555 3.05 0.149 0.238 1.1 -0.225 -- -0.00271 17.3 30.01 32 13.1 4.79
123.49 0.518 3.05 0.273 0.326 1.19 -- 2.53 -0.00981 17.4 29.98 32 13 4.79
139.59 0.55 3.04 0.316 0.3 1.08 -- -- 0.0126 17.4 30.02 36 13.1 4.85
127.61 0.526 3.04 0.311 -- 1.33 -- 2.34 -0.00445 -- 30.04 34 13 4.9
172.33 0.615 3.02 0.246 0.799 -- 0.816 -- 0.0647 16.7 -- -- -- --
174.06 0.618 3.02 0.25 0.806 -- -- -- 0.0688 16.8 -- -- -- --
140.48 0.552 3.04 0.206 -- 1.25 -- -- -0.000907 -- 32.8 52 13.5 4.28
142.28 0.556 3.04 -- 0.28 1.09 -- -- -0.00497 17.5 30.07 36 13.1 4.84
208.42 0.675 3.01 0.22 -- -- -- -- 0.0479 -- -- -- -- --
175.7 0.62 3.03 -- 0.801 -- -- -- 0.041 16.8 -- -- -- --
141.95 0.555 3.04 -- -- 1.28 -- -- -0.0139 -- 33.3 55 13.5 4.24
209.7 0.676 3.02 -- -- -- -- -- 0.0235 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 125.58 temperature 30.0 30 < th dose independent rect. 13 5
3 127.15 temperature 30.0 270 < th dose independent rect. 13 2
6 128.60 atmosphere 1005.0 270 > th dose dependent rect. 13 2
9 129.46 temperature 30.0 90 < th dose dependent rect. 13 4
11 130.11 atmosphere 1000.0 90 > th dose dependent rect. 13 4
16 131.29 atmosphere 995.0 10 > th dose dependent rect. 13 5
19 131.61 temperature 30.0 10 < th dose dependent rect. 13 5
31 133.12 humidity 60.0 90 > th dose independent rect. 13 4
32 133.16 atmosphere 995.0 90 > th dose independent rect. 13 4
45 134.32 atmosphere 995.0 10 > th dose independent rect. 13 5
46 134.33 humidity 60.0 270 > th dose independent rect. 13 2
49 134.49 radiation 40.0 10 < th dose independent rect. 12 6
52 134.86 humidity 50.0 90 > th dose dependent rect. 13 4
54 134.95 wind 1.0 90 > th dose independent rect. 13 4
66 135.89 temperature 20.0 90 > th dose independent rect. 13 4
72 136.44 temperature 30.0 90 < th dose dependent rect. 15 2
76 136.61 temperature 15.0 90 > th dose independent rect. 17 20
81 136.77 temperature 10.0 90 > th dose independent rect. 13 4
83 136.77 atmosphere 1010.0 90 < th dose independent rect. 13 4
92 136.86 wind 9.0 90 < th dose independent rect. 13 4
96 137.00 temperature 15.0 270 > th dose independent rect. 15 21
97 137.05 wind 9.0 90 < th dose independent rect. 17 20
101 137.21 wind 1.0 270 > th dose independent rect. 13 1
103 137.29 temperature 15.0 270 > th dose independent rect. 14 23
116 137.52 humidity 50.0 10 > th dose dependent rect. 13 5
117 137.58 precipitation 0.1 90 < th dose independent rect. 13 4
118 137.58 precipitation 0.1 90 < th dose dependent rect. 13 4
119 137.63 temperature 20.0 270 > th dose independent rect. 13 1
121 137.63 wind 9.0 270 < th dose independent rect. 15 21
122 137.67 radiation 1.0 270 > th dose independent rect. 12 3
124 137.70 temperature 20.0 10 > th dose independent rect. 13 5
125 137.71 atmosphere 995.0 270 > th dose independent rect. 11 5
126 137.78 temperature 15.0 10 > th dose independent rect. 18 19
127 137.83 wind 9.0 270 < th dose independent rect. 13 1
129 137.85 temperature 10.0 270 > th dose independent rect. 13 1
132 137.85 atmosphere 1010.0 270 < th dose independent rect. 13 1
137 137.90 wind 9.0 10 < th dose independent rect. 13 5
139 137.92 temperature 10.0 10 > th dose independent rect. 13 5
141 137.92 atmosphere 1010.0 10 < th dose independent rect. 13 5
144 137.95 radiation 1.0 270 > th dose independent rect. 13 1
146 138.05 atmosphere 1005.0 90 > th dose independent rect. 13 4
153 138.19 wind 9.0 10 < th dose independent rect. 18 19
154 138.20 atmosphere 995.0 10 > th dose independent rect. 18 19
165 138.42 precipitation 0.1 10 < th dose independent rect. 13 5
166 138.42 precipitation 0.1 10 < th dose dependent rect. 13 5
170 138.53 radiation 40.0 90 < th dose dependent rect. 13 4
179 138.70 wind 9.0 270 < th dose independent rect. 14 23
184 138.82 humidity 50.0 270 > th dose dependent rect. 13 2
188 138.97 precipitation 0.1 90 < th dose independent rect. 17 20
189 138.97 precipitation 0.1 90 < th dose dependent rect. 17 20
191 139.01 wind 1.0 270 > th dose independent rect. 11 5
206 139.25 wind 9.0 90 < th dose dependent rect. 13 4
221 139.56 precipitation 0.1 270 < th dose independent rect. 15 21
222 139.56 precipitation 0.1 270 < th dose dependent rect. 15 21
229 139.77 wind 9.0 270 < th dose dependent rect. 13 2
248 140.22 precipitation 0.1 270 < th dose independent rect. 13 1
249 140.22 precipitation 0.1 270 < th dose dependent rect. 13 1
263 140.55 radiation 40.0 270 < th dose independent rect. 12 3
268 140.60 temperature 20.0 270 > th dose independent rect. 11 5
273 140.68 temperature 10.0 270 > th dose independent rect. 11 5
274 140.68 atmosphere 1015.0 270 < th dose independent rect. 11 5
279 140.73 wind 9.0 270 < th dose independent rect. 11 5
285 140.74 wind 9.0 10 < th dose dependent rect. 13 5
325 141.43 precipitation 0.1 270 < th dose independent rect. 11 5
326 141.43 precipitation 0.1 270 < th dose dependent rect. 11 5
344 141.75 temperature 15.0 1440 > th dose independent rect. 14 5
380 142.33 temperature 10.0 90 > th dose dependent rect. 17 20
413 142.70 temperature 10.0 1440 > th dose independent rect. 19 19
416 142.70 atmosphere 995.0 1440 > th dose independent rect. 19 19
460 143.14 radiation 20.0 90 < th dose independent rect. 13 4
465 143.22 temperature 10.0 10 > th dose dependent rect. 18 19
468 143.26 atmosphere 1015.0 10 < th dose independent rect. 18 19
551 144.02 radiation 40.0 10 < th dose dependent rect. 13 5
667 145.09 radiation 40.0 270 < th dose independent rect. 16 19
716 145.59 humidity 50.0 30 > th dose independent rect. 18 19
728 145.65 humidity 90.0 270 < th dose independent rect. 12 3
801 146.29 radiation 30.0 90 < th dose dependent rect. 15 2
835 146.53 radiation 1.0 270 > th dose independent rect. 16 20
863 146.76 wind 1.0 270 > th dose dependent rect. 12 2
870 146.81 wind 1.0 10 > th dose independent rect. 18 19
871 146.83 wind 1.0 270 > th dose independent rect. 16 19
914 147.08 temperature 10.0 270 > th dose dependent rect. 15 21
955 147.33 radiation 20.0 10 < th dose independent rect. 13 5