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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0855100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to WRKY transcription factor 12.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.22 (0.0516) R2 : 0.119
β1 : -0.819 (0.205) R2dD : 0.0604 R2D : -0.114
β2 : 5.82 (1.16) R2dC : 6.77 R2C : -6.75
β3 : -5.7 (1.14) R2dE : 6.77 R2E : -6.71
β4 : -29.3 (5.44) R2dD*C : 11.2 R2D*C : -10.8
β5 : 27.9 (5.3) R2dD*E : 10.6 R2D*E : -11.1
γ1 : -0.196 (0.0871) R2dN8 : 0.0132 R2N8 : -0.0252
σ : 0.769
deviance : 268.05
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_____
C
peak time of C : 22.1
E
wheather : radiation
threshold : 39.34
memory length : 10
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 7.98
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
268.05 0.769 3.22 -0.819 5.82 -5.7 -29.3 27.9 -0.196 22.1 39.34 10 7.98 --
288.3 0.797 3.2 -0.109 4.84 -4.75 -0.72 -- -0.203 22.1 39.34 10 7.98 --
288.86 0.798 3.2 -0.0877 4.82 -4.74 -- -0.6 -0.203 22.1 39.34 10 7.98 --
284.52 0.791 3.23 -0.0758 5.75 -5.64 -- -- -0.203 22.1 39.45 10 7.98 --
299.34 0.81 3.07 -0.0794 -- -0.0409 -- -0.717 -0.186 -- 22.46 41 8.78 --
293.82 0.804 3.07 -0.0976 0.0444 -- -1.76 -- -0.178 18.3 -- -- -- --
301.45 0.813 3.07 -0.0756 0.048 -- -- -- -0.184 15.6 -- -- -- --
298.62 0.805 3.07 -0.0541 -- -0.187 -- -- -0.191 -- 39.69 10 17.9 --
284.67 0.79 3.23 -- 5.75 -5.64 -- -- -0.195 22.1 39.45 10 7.98 --
301.58 0.811 3.07 -0.0776 -- -- -- -- -0.185 -- -- -- -- --
301.6 0.812 3.07 -- 0.0495 -- -- -- -0.175 15.6 -- -- -- --
298.62 0.805 3.07 -- -- -0.233 -- -- -0.185 -- 39.72 10 17.7 --
301.73 0.811 3.07 -- -- -- -- -- -0.177 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 262.77 radiation 30.0 10 > th dose independent rect. 12 2
2 265.01 wind 7.0 90 > th dose dependent rect. 13 1
3 265.10 wind 7.0 10 > th dose dependent rect. 13 1
5 265.38 wind 7.0 30 > th dose independent rect. 13 2
20 267.11 radiation 30.0 30 > th dose dependent rect. 12 2
49 268.08 temperature 25.0 10 > th dose dependent rect. 5 1
71 268.41 radiation 40.0 10 < th dose independent sin 14 NA
77 269.04 humidity 90.0 90 > th dose independent rect. 9 1
78 269.04 humidity 90.0 90 > th dose dependent rect. 9 1
86 269.66 wind 3.0 90 > th dose dependent rect. 12 1
90 270.21 temperature 25.0 10 > th dose independent rect. 5 1
113 270.85 atmosphere 1005.0 30 > th dose independent rect. 12 2
157 271.53 wind 7.0 10 > th dose independent rect. 13 9
162 271.57 radiation 40.0 30 > th dose dependent sin 13 NA
167 271.76 wind 7.0 90 > th dose independent rect. 20 5
176 271.85 humidity 70.0 90 < th dose independent rect. 12 1
179 271.94 radiation 40.0 30 > th dose independent sin 13 NA
184 272.33 atmosphere 1000.0 30 > th dose dependent rect. 12 2
186 272.41 wind 3.0 10 > th dose independent rect. 12 2
209 273.07 wind 5.0 90 > th dose dependent rect. 20 5
225 273.99 humidity 80.0 90 < th dose dependent rect. 12 1
229 274.06 wind 1.0 10 > th dose dependent rect. 12 13
231 274.09 wind 5.0 90 > th dose dependent rect. 21 1
249 274.64 temperature 25.0 90 > th dose independent rect. 12 1
253 274.81 wind 5.0 10 > th dose dependent rect. 13 11
294 275.38 wind 7.0 90 > th dose independent rect. 12 10
334 275.68 wind 9.0 90 < th dose independent rect. 12 1
347 275.88 temperature 10.0 90 > th dose dependent rect. 12 1
348 275.89 atmosphere 1010.0 90 < th dose independent rect. 12 1
352 275.92 wind 7.0 10 > th dose independent rect. 13 6
355 275.93 humidity 50.0 90 > th dose independent rect. 12 1
356 275.93 humidity 90.0 90 < th dose independent rect. 12 1
361 275.97 temperature 10.0 90 > th dose independent rect. 12 1
363 275.97 atmosphere 995.0 90 > th dose independent rect. 12 1
365 275.97 precipitation 0.1 90 < th dose independent rect. 12 1
366 275.97 temperature 10.0 90 > th dose independent rect. 13 23
368 275.97 precipitation 0.1 90 < th dose dependent rect. 12 1
369 276.01 wind 9.0 90 > th dose independent rect. 18 4
382 276.14 precipitation 0.1 90 < th dose independent rect. 13 23
383 276.14 precipitation 0.1 90 < th dose dependent rect. 13 23
399 276.46 wind 9.0 90 > th dose dependent rect. 18 4
400 276.47 wind 7.0 30 > th dose independent rect. 21 1
424 276.57 humidity 60.0 10 > th dose independent rect. 12 2
430 276.61 wind 9.0 90 < th dose independent rect. 13 23
472 277.27 wind 1.0 10 > th dose dependent rect. 12 17
474 277.33 temperature 30.0 90 < th dose independent rect. 12 1
478 277.35 wind 9.0 10 > th dose independent rect. 21 14
481 277.35 wind 9.0 10 > th dose dependent rect. 21 14
485 277.37 wind 7.0 10 > th dose dependent rect. 21 7
487 277.38 atmosphere 995.0 90 > th dose independent rect. 13 23
508 277.39 wind 7.0 10 < th dose independent rect. 13 23
544 277.47 humidity 70.0 10 < th dose independent rect. 12 2
874 278.57 wind 7.0 90 > th dose dependent rect. 23 10
922 278.66 radiation 1.0 30 > th dose dependent rect. 5 1
934 278.67 wind 7.0 90 > th dose independent rect. 23 10
976 278.72 wind 7.0 10 < th dose independent sin 14 NA
977 278.72 temperature 10.0 1440 > th dose independent rect. 13 2
981 278.72 temperature 10.0 1440 > th dose independent rect. 15 22
989 278.78 wind 7.0 10 > th dose independent sin 13 NA
994 278.79 humidity 50.0 90 > th dose dependent rect. 12 1
996 278.80 wind 5.0 90 > th dose independent rect. 24 3