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Os03g0853700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : GC-rich sequence DNA-binding factor-like family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0132) R2 : 0.397
β1 : 0.839 (0.0485) R2dD : 0.411 R2D : 0.385
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0723 (0.0283) R2dN8 : 0.0116 R2N8 : -0.0141
σ : 0.248
deviance : 28.28
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
15.85 0.187 10.9 0.881 0.352 0.503 -0.297 -0.0844 0.106 9.9 79.68 1293 -- --
15.85 0.185 10.9 0.877 0.35 0.499 -0.297 -- 0.105 9.87 80 1285 -- --
16.18 0.187 10.9 0.873 0.349 0.494 -- -0.128 0.105 10 79.77 1285 -- --
16.19 0.187 10.9 0.862 0.353 0.488 -- -- 0.104 10 79.81 1293 -- --
18.35 0.199 10.9 0.874 -- 0.565 -- -0.165 0.101 -- 80.6 878 -- --
19.09 0.205 10.9 0.855 0.382 -- -0.232 -- 0.0743 10.4 -- -- -- --
19.3 0.206 10.9 0.846 0.382 -- -- -- 0.0739 10.5 -- -- -- --
18.4 0.2 10.9 0.861 -- 0.565 -- -- 0.0987 -- 80.56 882 -- --
32.55 0.266 10.9 -- 0.277 0.624 -- -- 0.094 10.4 87.99 2309 -- --
28.28 0.248 10.9 0.839 -- -- -- -- 0.0723 -- -- -- -- --
38.16 0.289 10.9 -- 0.377 -- -- -- -0.0203 10.4 -- -- -- --
36.12 0.28 10.9 -- -- 0.556 -- -- 0.0579 -- 86.09 844 -- --
46.86 0.32 10.9 -- -- -- -- -- -0.0208 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 15.30 wind 3.0 43200 < th dose independent rect. 12 1
2 15.33 radiation 1.0 4320 < th dose independent rect. 18 8
5 15.34 radiation 1.0 4320 < th dose independent rect. 18 2
12 15.39 humidity 90.0 1440 > th dose independent rect. 9 15
13 15.40 radiation 40.0 4320 < th dose independent rect. 7 2
17 15.41 radiation 40.0 4320 < th dose independent rect. 16 17
19 15.42 radiation 40.0 4320 < th dose independent rect. 18 15
32 15.48 wind 3.0 43200 > th dose independent rect. 12 1
33 15.49 radiation 1.0 4320 > th dose independent rect. 18 1
46 15.49 radiation 30.0 4320 > th dose dependent rect. 16 17
55 15.50 wind 5.0 43200 < th dose dependent rect. 12 1
56 15.50 radiation 30.0 4320 > th dose dependent rect. 7 2
91 15.57 temperature 30.0 720 < th dose dependent rect. 14 20
93 15.58 humidity 90.0 14400 < th dose independent rect. 19 9
94 15.58 humidity 90.0 14400 > th dose independent rect. 19 10
97 15.59 wind 1.0 43200 > th dose dependent rect. 24 1
110 15.62 humidity 90.0 1440 < th dose independent rect. 9 14
112 15.63 wind 9.0 43200 < th dose independent rect. 5 1
113 15.63 humidity 90.0 14400 < th dose independent rect. 22 3
121 15.64 humidity 90.0 1440 > th dose independent sin 20 NA
122 15.64 atmosphere 1005.0 14400 < th dose independent rect. 16 1
127 15.65 atmosphere 1005.0 14400 > th dose independent rect. 16 1
131 15.65 temperature 25.0 720 < th dose dependent rect. 15 17
146 15.67 humidity 90.0 1440 > th dose dependent rect. 8 16
157 15.68 wind 9.0 43200 < th dose dependent rect. 24 1
161 15.69 radiation 20.0 14400 < th dose independent rect. 2 4
165 15.69 radiation 30.0 4320 > th dose independent rect. 16 17
166 15.69 humidity 90.0 14400 > th dose dependent rect. 23 3
168 15.69 wind 3.0 43200 < th dose dependent rect. 23 6
175 15.70 temperature 20.0 4320 < th dose independent rect. 20 2
182 15.70 wind 9.0 43200 > th dose dependent rect. 5 1
188 15.71 radiation 30.0 4320 > th dose independent rect. 7 2
205 15.71 humidity 80.0 1440 > th dose independent rect. 10 22
214 15.72 humidity 80.0 1440 < th dose independent rect. 10 22
215 15.72 humidity 80.0 1440 > th dose dependent rect. 9 12
224 15.73 humidity 90.0 14400 > th dose dependent rect. 21 6
225 15.73 humidity 90.0 14400 > th dose dependent rect. 19 9
229 15.74 wind 9.0 43200 > th dose independent rect. 5 1
246 15.75 humidity 90.0 14400 > th dose dependent rect. 24 1
293 15.77 humidity 80.0 1440 > th dose independent rect. 10 19
296 15.77 humidity 80.0 43200 > th dose dependent rect. 7 3
304 15.78 temperature 10.0 1440 > th dose dependent rect. 17 1
305 15.78 humidity 80.0 43200 > th dose dependent rect. 9 1
306 15.78 radiation 1.0 14400 < th dose dependent rect. 6 1
312 15.79 humidity 90.0 14400 > th dose independent sin 11 NA
313 15.79 temperature 20.0 4320 > th dose independent rect. 21 1
328 15.79 temperature 25.0 720 < th dose dependent sin 12 NA
335 15.79 humidity 80.0 43200 > th dose dependent rect. 6 5
336 15.79 radiation 1.0 14400 < th dose dependent rect. 18 14
344 15.79 temperature 10.0 720 > th dose dependent rect. 1 23
374 15.81 humidity 90.0 14400 < th dose independent sin 11 NA
375 15.81 humidity 80.0 720 < th dose independent sin 15 NA
377 15.81 humidity 80.0 14400 > th dose independent rect. 14 1
408 15.81 temperature 10.0 720 > th dose dependent rect. 23 23
421 15.82 humidity 90.0 1440 > th dose dependent sin 20 NA
422 15.82 radiation 1.0 14400 < th dose dependent sin 10 NA
425 15.82 radiation 1.0 14400 < th dose dependent rect. 4 4
429 15.82 wind 3.0 43200 < th dose dependent rect. 21 8
440 15.82 humidity 70.0 1440 > th dose dependent rect. 10 20
442 15.82 temperature 15.0 720 > th dose dependent rect. 17 22
447 15.83 humidity 80.0 720 < th dose independent rect. 16 10
451 15.83 humidity 80.0 43200 > th dose dependent rect. 19 1
478 15.84 atmosphere 1005.0 43200 < th dose independent rect. 8 1
506 15.84 temperature 10.0 1440 > th dose dependent rect. 12 9
525 15.85 humidity 90.0 1440 < th dose independent sin 21 NA
526 15.85 humidity 80.0 14400 < th dose independent rect. 14 1
552 15.85 temperature 10.0 1440 > th dose dependent rect. 12 7
572 15.86 atmosphere 1005.0 43200 > th dose independent rect. 8 1
589 15.86 radiation 1.0 4320 < th dose dependent rect. 18 1
600 15.86 temperature 20.0 1440 > th dose dependent rect. 15 7
602 15.86 radiation 1.0 4320 < th dose dependent rect. 18 7
640 15.86 temperature 30.0 720 < th dose dependent rect. 17 22
642 15.86 temperature 10.0 720 > th dose dependent rect. 21 23
646 15.87 precipitation 0.1 43200 > th dose independent rect. 23 1
651 15.87 humidity 90.0 43200 < th dose independent rect. 5 5
672 15.87 radiation 1.0 14400 > th dose independent rect. 17 16
677 15.87 humidity 90.0 14400 > th dose dependent sin 12 NA
681 15.87 precipitation 0.1 43200 > th dose dependent rect. 23 1
682 15.87 temperature 30.0 1440 < th dose dependent rect. 17 2
776 15.88 temperature 10.0 720 > th dose dependent rect. 19 23
786 15.89 wind 9.0 43200 < th dose independent rect. 18 2
878 15.90 temperature 10.0 720 > th dose dependent no NA NA
925 15.90 temperature 10.0 720 > th dose dependent rect. 6 23
928 15.91 wind 9.0 43200 > th dose independent rect. 18 2
933 15.91 humidity 90.0 43200 < th dose independent rect. 5 7
942 15.91 temperature 20.0 720 < th dose independent rect. 12 20
946 15.91 temperature 30.0 720 < th dose dependent no NA NA
994 15.91 temperature 30.0 720 < th dose dependent rect. 7 23
997 15.92 radiation 1.0 14400 < th dose independent sin 11 NA